Complete genome sequence of Shewanella benthica DB21MT-2, an obligate piezophilic bacterium isolated from the deepest Mariana Trench sediment
文献类型：期刊论文
| 作者 | Chen, Li-Hong5,10; Kato, Chiaki3; Guerin, Thomas4; Fouteau, Stephanie4; Mangenot, Sophie4; Barbe, Valerie4; Zhang, Chan1,6 ; Li, Xue-Gong6,7,8,9; Yang, Jian5,10; Wu, Long-Fei2,7,8
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| 刊名 | MARINE GENOMICS
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| 出版日期 | 2019-04-01 |
| 卷号 | 44期号:1页码:52-56 |
| 关键词 | Shewanella Benthica Complete Genome Obligate Piezophile The Mariana Trench Toxin-antitoxin |
| ISSN号 | 1874-7787 |
| DOI | 10.1016/j.margen.2018.09.001 |
| 英文摘要 | Shewanella benthica DB21MT-2 is an obligate piezophilic bacterium isolated from the sediment of the Mariana Trench at depth of 10,898 m. Here we report the complete genome sequence of S. benthica DB21MT-2, which consists of a single circular chromosome with the size of 4,353,505 bp and G + C content of 45.86%. Comparative genomic analysis reveals the strain possesses multiple pathways for energy generation as has been reported in other deep-sea bacteria. In addition, several genes predicted to be involved in flagellar synthesis or component of toxin-antitoxin system are specifically found in obligate piezophilic strains from hadal trench. The result is expected to provide novel information for a better understanding on bacterial obligate piezophilic lifestyle and on bacterial adaptation to hadal trench environment. |
| WOS关键词 | Sp-nov. ; Challenger Deep ; High-pressure ; Prediction ; Systems |
| 资助项目 | NSFC from the National Natural Science Foundation of China[41506147] ; NSFC from the National Natural Science Foundation of China[91751108] ; Strategic Priority Research Program grant from the Chinese Academy of Sciences[XDB06010203] ; Sanya city[2016PT18] ; Centre National de la Recherche Scientifique ; France Genomique National infrastructure (Investissement d'avenir program)[ANR-10-INBS-09] ; LABGeM (CEA/IG/Genoscope) ; LABGeM (CNRS)[UMR8030] |
| WOS研究方向 | Genetics & Heredity ; Marine & Freshwater Biology |
| 语种 | 英语 |
| WOS记录号 | WOS:000462800700006 |
| 出版者 | ELSEVIER SCIENCE BV |
| 资助机构 | NSFC from the National Natural Science Foundation of China ; Strategic Priority Research Program grant from the Chinese Academy of Sciences ; Sanya city ; Centre National de la Recherche Scientifique ; France Genomique National infrastructure (Investissement d'avenir program) ; LABGeM (CEA/IG/Genoscope) ; LABGeM (CNRS) |
| 版本 | 出版稿 |
| 源URL | [http://ir.idsse.ac.cn/handle/183446/6609]  |
| 专题 | 深海科学研究部_深海生物学研究室_深海微生物细胞生物学研究组 |
| 通讯作者 | Zhang, Wei-Jia |
| 作者单位 | 1.UCAS, Beijing, Peoples R China 2.Aix Marseille Univ, CNRS, LCB UMR 7257, Marseille, France 3.Japan Agcy Marine Earth Sci & Technol, Dept Marine Biodivers Res, Yokosuka, Kanagawa 2370061, Japan 4.CEA, DSV, IG, Genoscope,LF, Evry, France 5.Peking Union Med Coll, Beijing, Peoples R China 6.Chinese Acad Sci, Inst Deep Sea Sci & Engn, Lab Deep Sea Microbial Cell Biol, Sanya, Peoples R China 7.France China Joint Lab Evolut & Dev Magnetotact M, Marseille, France 8.Chinese Acad Sci, IDSSE, 28 LuHuiTou Rd, Sanya, Hainan, Peoples R China 9.Chinese Acad Sci, Inst Deep Sea Sci & Engn, Lab Expt Study Deep Sea Extreme Condit, Sanya, Peoples R China 10.Chinese Acad Med Sci, Inst Pathogen Biol, MOH Key Lab Syst Biol Pathogens, Beijing, Peoples R China |
| 推荐引用方式 GB/T 7714 | Chen, Li-Hong,Kato, Chiaki,Guerin, Thomas,et al. Complete genome sequence of Shewanella benthica DB21MT-2, an obligate piezophilic bacterium isolated from the deepest Mariana Trench sediment[J]. MARINE GENOMICS,2019,44(1):52-56. |
| APA | Chen, Li-Hong.,Kato, Chiaki.,Guerin, Thomas.,Fouteau, Stephanie.,Mangenot, Sophie.,...&Zhang, Wei-Jia.(2019).Complete genome sequence of Shewanella benthica DB21MT-2, an obligate piezophilic bacterium isolated from the deepest Mariana Trench sediment.MARINE GENOMICS,44(1),52-56. |
| MLA | Chen, Li-Hong,et al."Complete genome sequence of Shewanella benthica DB21MT-2, an obligate piezophilic bacterium isolated from the deepest Mariana Trench sediment".MARINE GENOMICS 44.1(2019):52-56. |
入库方式： OAI收割
来源：深海科学与工程研究所
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