Comparative transcriptome analysis of Eogammarus possjeticus at different hydrostatic pressure and temperature exposures
文献类型:期刊论文
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作者 | Chen, Jiawei1,2![]() ![]() ![]() ![]() |
刊名 | SCIENTIFIC REPORTS
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出版日期 | 2019-03-05 ; 2019-03-05 |
卷号 | 9期号:1页码:10 |
ISSN号 | 2045-2322 ; 2045-2322 |
DOI | 10.1038/s41598-019-39716-y ; 10.1038/s41598-019-39716-y |
通讯作者 | Zhang, Haibin |
英文摘要 | Hydrostatic pressure is an important environmental factor affecting the vertical distribution of marine organisms. Laboratory-based studies have shown that many extant shallow-water marine benthic invertebrates can tolerate hydrostatic pressure outside their known natural distributions. However, only a few studies have focused on the molecular mechanisms of pressure acclimatisation. In the present work, we examined the pressure tolerance of the shallow-water amphipod Eogammarus possjeticus at various temperatures (5, 10, 15, and 20 degrees C) and hydrostatic pressures (0.1-30 MPa) for 16 h. Six of these experimental groups were used for transcriptome analysis. We found that 100% of E. possjeticus survived under 20 MPa at all temperature conditions for 16 h. Sequence assembly resulted in 138, 304 unigenes. Results of differential expression analysis revealed that 94 well-annotated genes were up-regulated under high pressure. All these findings indicated that the pressure tolerance of E. possjeticus was related to temperature. Several biological processes including energy metabolism, antioxidation, immunity, lipid metabolism, membrane-related process, genetic information processing, and DNA repair are probably involved in the acclimatisation in deep-sea environments. ;Hydrostatic pressure is an important environmental factor affecting the vertical distribution of marine organisms. Laboratory-based studies have shown that many extant shallow-water marine benthic invertebrates can tolerate hydrostatic pressure outside their known natural distributions. However, only a few studies have focused on the molecular mechanisms of pressure acclimatisation. In the present work, we examined the pressure tolerance of the shallow-water amphipod Eogammarus possjeticus at various temperatures (5, 10, 15, and 20 degrees C) and hydrostatic pressures (0.1-30 MPa) for 16 h. Six of these experimental groups were used for transcriptome analysis. We found that 100% of E. possjeticus survived under 20 MPa at all temperature conditions for 16 h. Sequence assembly resulted in 138, 304 unigenes. Results of differential expression analysis revealed that 94 well-annotated genes were up-regulated under high pressure. All these findings indicated that the pressure tolerance of E. possjeticus was related to temperature. Several biological processes including energy metabolism, antioxidation, immunity, lipid metabolism, membrane-related process, genetic information processing, and DNA repair are probably involved in the acclimatisation in deep-sea environments. |
WOS关键词 | Shrimp Palaemonetes-varians ; Shrimp Palaemonetes-varians ; Deep-sea ; Metabolic-rates ; Stress-proteins ; Fatty-acid ; Shallow ; Insights ; Adaptations ; Acclimation ; Tolerance ; Deep-sea ; Metabolic-rates ; Stress-proteins ; Fatty-acid ; Shallow ; Insights ; Adaptations ; Acclimation ; Tolerance |
资助项目 | National Key Research and Development Program of China[2017YFC0306600] ; National Key Research and Development Program of China[2017YFC0306600] ; Major scientific and technological projects of Hainan Province[ZDKJ2016012] ; Sanya Key Laboratory Program[L1501] ; Hundred Talents Program of the Chinese Academy of Sciences[SIDSSE-BR-201401] ; Hundred Talents Program of the Chinese Academy of Sciences[Y510021] ; Knowledge Innovation Program of the Chinese Academy of Sciences[SIDSSE-201401] ; Major scientific and technological projects of Hainan Province[ZDKJ2016012] ; Sanya Key Laboratory Program[L1501] ; Hundred Talents Program of the Chinese Academy of Sciences[SIDSSE-BR-201401] ; Hundred Talents Program of the Chinese Academy of Sciences[Y510021] ; Knowledge Innovation Program of the Chinese Academy of Sciences[SIDSSE-201401] |
WOS研究方向 | Science & Technology - Other Topics ; Science & Technology - Other Topics |
语种 | 英语 ; 英语 |
WOS记录号 | WOS:000460381600029 ; WOS:000460381600029 |
出版者 | NATURE PUBLISHING GROUP ; NATURE PUBLISHING GROUP |
资助机构 | National Key Research and Development Program of China ; National Key Research and Development Program of China ; Major scientific and technological projects of Hainan Province ; Sanya Key Laboratory Program ; Hundred Talents Program of the Chinese Academy of Sciences ; Knowledge Innovation Program of the Chinese Academy of Sciences ; Major scientific and technological projects of Hainan Province ; Sanya Key Laboratory Program ; Hundred Talents Program of the Chinese Academy of Sciences ; Knowledge Innovation Program of the Chinese Academy of Sciences |
版本 | 出版稿 |
源URL | [http://ir.idsse.ac.cn/handle/183446/6674] ![]() |
专题 | 深海科学研究部_深海生物学研究室_海洋生物生态与进化研究组 |
通讯作者 | Zhang, Haibin |
作者单位 | 1.Chinese Acad Sci, Inst Deep Sea Sci & Engn, Sanya 572000, Peoples R China 2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China |
推荐引用方式 GB/T 7714 | Chen, Jiawei,Liu, Helu,Cai, Shanya,et al. Comparative transcriptome analysis of Eogammarus possjeticus at different hydrostatic pressure and temperature exposures, Comparative transcriptome analysis of Eogammarus possjeticus at different hydrostatic pressure and temperature exposures[J]. SCIENTIFIC REPORTS, SCIENTIFIC REPORTS,2019, 2019,9, 9(1):10, 10. |
APA | Chen, Jiawei,Liu, Helu,Cai, Shanya,&Zhang, Haibin.(2019).Comparative transcriptome analysis of Eogammarus possjeticus at different hydrostatic pressure and temperature exposures.SCIENTIFIC REPORTS,9(1),10. |
MLA | Chen, Jiawei,et al."Comparative transcriptome analysis of Eogammarus possjeticus at different hydrostatic pressure and temperature exposures".SCIENTIFIC REPORTS 9.1(2019):10. |
入库方式: OAI收割
来源:深海科学与工程研究所
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