中国科学院机构知识库网格
Chinese Academy of Sciences Institutional Repositories Grid
Comparative transcriptome analysis of Eogammarus possjeticus at different hydrostatic pressure and temperature exposures

文献类型:期刊论文

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作者Chen, Jiawei1,2; Liu, Helu1; Cai, Shanya1,2; Zhang, Haibin1
刊名SCIENTIFIC REPORTS ; SCIENTIFIC REPORTS
出版日期2019-03-05 ; 2019-03-05
卷号9期号:1页码:10
ISSN号2045-2322 ; 2045-2322
DOI10.1038/s41598-019-39716-y ; 10.1038/s41598-019-39716-y
通讯作者Zhang, Haibin
英文摘要

Hydrostatic pressure is an important environmental factor affecting the vertical distribution of marine organisms. Laboratory-based studies have shown that many extant shallow-water marine benthic invertebrates can tolerate hydrostatic pressure outside their known natural distributions. However, only a few studies have focused on the molecular mechanisms of pressure acclimatisation. In the present work, we examined the pressure tolerance of the shallow-water amphipod Eogammarus possjeticus at various temperatures (5, 10, 15, and 20 degrees C) and hydrostatic pressures (0.1-30 MPa) for 16 h. Six of these experimental groups were used for transcriptome analysis. We found that 100% of E. possjeticus survived under 20 MPa at all temperature conditions for 16 h. Sequence assembly resulted in 138, 304 unigenes. Results of differential expression analysis revealed that 94 well-annotated genes were up-regulated under high pressure. All these findings indicated that the pressure tolerance of E. possjeticus was related to temperature. Several biological processes including energy metabolism, antioxidation, immunity, lipid metabolism, membrane-related process, genetic information processing, and DNA repair are probably involved in the acclimatisation in deep-sea environments.

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Hydrostatic pressure is an important environmental factor affecting the vertical distribution of marine organisms. Laboratory-based studies have shown that many extant shallow-water marine benthic invertebrates can tolerate hydrostatic pressure outside their known natural distributions. However, only a few studies have focused on the molecular mechanisms of pressure acclimatisation. In the present work, we examined the pressure tolerance of the shallow-water amphipod Eogammarus possjeticus at various temperatures (5, 10, 15, and 20 degrees C) and hydrostatic pressures (0.1-30 MPa) for 16 h. Six of these experimental groups were used for transcriptome analysis. We found that 100% of E. possjeticus survived under 20 MPa at all temperature conditions for 16 h. Sequence assembly resulted in 138, 304 unigenes. Results of differential expression analysis revealed that 94 well-annotated genes were up-regulated under high pressure. All these findings indicated that the pressure tolerance of E. possjeticus was related to temperature. Several biological processes including energy metabolism, antioxidation, immunity, lipid metabolism, membrane-related process, genetic information processing, and DNA repair are probably involved in the acclimatisation in deep-sea environments.

WOS关键词Shrimp Palaemonetes-varians ; Shrimp Palaemonetes-varians ; Deep-sea ; Metabolic-rates ; Stress-proteins ; Fatty-acid ; Shallow ; Insights ; Adaptations ; Acclimation ; Tolerance ; Deep-sea ; Metabolic-rates ; Stress-proteins ; Fatty-acid ; Shallow ; Insights ; Adaptations ; Acclimation ; Tolerance
资助项目National Key Research and Development Program of China[2017YFC0306600] ; National Key Research and Development Program of China[2017YFC0306600] ; Major scientific and technological projects of Hainan Province[ZDKJ2016012] ; Sanya Key Laboratory Program[L1501] ; Hundred Talents Program of the Chinese Academy of Sciences[SIDSSE-BR-201401] ; Hundred Talents Program of the Chinese Academy of Sciences[Y510021] ; Knowledge Innovation Program of the Chinese Academy of Sciences[SIDSSE-201401] ; Major scientific and technological projects of Hainan Province[ZDKJ2016012] ; Sanya Key Laboratory Program[L1501] ; Hundred Talents Program of the Chinese Academy of Sciences[SIDSSE-BR-201401] ; Hundred Talents Program of the Chinese Academy of Sciences[Y510021] ; Knowledge Innovation Program of the Chinese Academy of Sciences[SIDSSE-201401]
WOS研究方向Science & Technology - Other Topics ; Science & Technology - Other Topics
语种英语 ; 英语
WOS记录号WOS:000460381600029 ; WOS:000460381600029
出版者NATURE PUBLISHING GROUP ; NATURE PUBLISHING GROUP
资助机构National Key Research and Development Program of China ; National Key Research and Development Program of China ; Major scientific and technological projects of Hainan Province ; Sanya Key Laboratory Program ; Hundred Talents Program of the Chinese Academy of Sciences ; Knowledge Innovation Program of the Chinese Academy of Sciences ; Major scientific and technological projects of Hainan Province ; Sanya Key Laboratory Program ; Hundred Talents Program of the Chinese Academy of Sciences ; Knowledge Innovation Program of the Chinese Academy of Sciences
版本出版稿
源URL[http://ir.idsse.ac.cn/handle/183446/6674]  
专题深海科学研究部_深海生物学研究室_海洋生物生态与进化研究组
通讯作者Zhang, Haibin
作者单位1.Chinese Acad Sci, Inst Deep Sea Sci & Engn, Sanya 572000, Peoples R China
2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
推荐引用方式
GB/T 7714
Chen, Jiawei,Liu, Helu,Cai, Shanya,et al. Comparative transcriptome analysis of Eogammarus possjeticus at different hydrostatic pressure and temperature exposures, Comparative transcriptome analysis of Eogammarus possjeticus at different hydrostatic pressure and temperature exposures[J]. SCIENTIFIC REPORTS, SCIENTIFIC REPORTS,2019, 2019,9, 9(1):10, 10.
APA Chen, Jiawei,Liu, Helu,Cai, Shanya,&Zhang, Haibin.(2019).Comparative transcriptome analysis of Eogammarus possjeticus at different hydrostatic pressure and temperature exposures.SCIENTIFIC REPORTS,9(1),10.
MLA Chen, Jiawei,et al."Comparative transcriptome analysis of Eogammarus possjeticus at different hydrostatic pressure and temperature exposures".SCIENTIFIC REPORTS 9.1(2019):10.

入库方式: OAI收割

来源:深海科学与工程研究所

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