Efficient and Large-Scale Dissipative Particle Dynamics Simulations on GPU
文献类型：期刊论文
| 作者 | Yang, Keda; Bai, Zhiqiang; Su, Jiaye; Guo, Hongxia |
| 刊名 | SOFT MATERIALS
 |
| 出版日期 | 2014-04-03 |
| 卷号 | 12期号:2页码:185-196 |
| 关键词 | Large-scale Gpu Gym_dpd Thermal Fluctuation Analysis Dissipative Particle Dynamics |
| ISSN号 | 1539-445X |
| DOI | 10.1080/1539445X.2013.858359 |
| 英文摘要 | In this paper, we introduce a complete implementation for efficient and large-scale dissipative particle dynamics (DPD) simulation on Graphics Processing Unit (GPU). The implementation is designed and optimized according to the nature of DPD simulation technique and also takes fully advantage of the computational power of GPUs. From studies of benchmarks, we show that the GPU-based implementation can predict the results correctly and provide nearly 60 times speedup over LAMMPS on a single Central Processing Unit (CPU) core. By using a novel divide-and-conquer (D&C) algorithm to reduce the memory requirement in simulation, our implementation has the capability to perform large-scale DPD simulations with some ten millions of particles on a single current GPU. Furthermore, the thermal fluctuation analysis of a superior large-scale lamellar system (11,059,200 particles) is presented as an important example of practical application of our implementation, and a scaling law at large wavelengths that is inaccessible to small simulation system, is observed. As a result, our GPU-based DPD implementation is very promising for studying various interesting phenomena, which often take place on the mesoscopic length and time scales and are not easily addressed by a conventional CPU-based implementation. |
| 语种 | 英语 |
| WOS记录号 | WOS:000334071000007 |
| 出版者 | TAYLOR & FRANCIS INC |
| 源URL | [http://ir.iccas.ac.cn/handle/121111/52057]  |
| 专题 | 中国科学院化学研究所 |
| 通讯作者 | Guo, Hongxia |
| 作者单位 | Chinese Acad Sci, Inst Chem, State Key Lab Polymer Phys & Chem, Beijing Natl Lab Mol Sci,Joint Lab Polymer Sci &, Beijing 100190, Peoples R China |
| 推荐引用方式 GB/T 7714 | Yang, Keda,Bai, Zhiqiang,Su, Jiaye,et al. Efficient and Large-Scale Dissipative Particle Dynamics Simulations on GPU[J]. SOFT MATERIALS,2014,12(2):185-196. |
| APA | Yang, Keda,Bai, Zhiqiang,Su, Jiaye,&Guo, Hongxia.(2014).Efficient and Large-Scale Dissipative Particle Dynamics Simulations on GPU.SOFT MATERIALS,12(2),185-196. |
| MLA | Yang, Keda,et al."Efficient and Large-Scale Dissipative Particle Dynamics Simulations on GPU".SOFT MATERIALS 12.2(2014):185-196. |
入库方式： OAI收割
来源：化学研究所
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