Comparative transcriptomic analysis of hypothalamus-pituitary-liver axis in bighead carp (Hypophthalmichthys nobilis) with differential growth rate
文献类型:期刊论文
作者 | Fu, Beide1; Yu, Xiaomu1; Tong, Jingou1; Pang, Meixia1,2; Zhou, Ying1,2; Liu, Qingshan1,2; Tao, Wenjing3 |
刊名 | BMC GENOMICS |
出版日期 | 2019-04-30 |
卷号 | 20期号:1页码:8 |
ISSN号 | 1471-2164 |
关键词 | Comparative transcriptomic Bighead carp Hypothalamus-pituitary-liver axis Growth rate |
DOI | 10.1186/s12864-019-5691-4 |
英文摘要 | BackgroundGrowth rate is one of the most important features for aquaculture species and deciphering its regulation mechanism has great significance both in genetics and in economics. Hypothalamus-pituitary growth axis (HP growth axis) or neuro-endocrine axis plays a vital role in growth regulation in different aquaculture animals.ResultsIn this study, the HP and liver transcriptomes of two female groups (H and L) with phenotypically extreme growth rate were sequenced using RNA-Seq. A total of 30,524 and 22,341 genes were found expressed in the two tissues, respectively. The average expression levels for the two tissues were almost the same, but the median differed significantly. A differential expression analysis between H and L groups identified 173 and 204 differentially expressed genes (DEGs) in HP and liver tissue, respectively. Pathway analysis revealed that DEGs in HP tissue were enriched in regulation of cell proliferation and angiogenesis while in liver tissue these genes were overrepresented in sterol biosynthesis and transportation. Genomic overlapping analyses found that 4 and 5 DEGs were within growth-related QTL in HP and liver tissue respectively. A deeper analysis of these 9 genes revealed 3 genes were functionally linked to the trait of interest. The expression of 2075 lncRNAs in HP tissue and 1490 in liver tissue were also detected, and some of lncRNAs were highly expressed in the two tissues.ConclusionsAbove all, the results of the present study greatly contributed to the knowledge of the regulation of growth and then assisted the design of new selection strategies for bighead carp with improved growth-related traits. |
WOS关键词 | IGF-I ; EXPRESSION ; GENES ; IDENTIFICATION ; STRINGTIE ; TRAITS ; HISAT |
资助项目 | National Natural Science Foundation of China[31472268] ; National Natural Science Foundation of China[31502147] ; State Key Laboratory of Freshwater Ecology and Biotechnology[2016FBZ05] ; Fundamental Research Funds for the Central Universities (Ministry of Education of China)[XDJK2018B025] |
WOS研究方向 | Biotechnology & Applied Microbiology ; Genetics & Heredity |
语种 | 英语 |
出版者 | BMC |
WOS记录号 | WOS:000466899800002 |
资助机构 | National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Fundamental Research Funds for the Central Universities (Ministry of Education of China) ; Fundamental Research Funds for the Central Universities (Ministry of Education of China) ; Fundamental Research Funds for the Central Universities (Ministry of Education of China) ; Fundamental Research Funds for the Central Universities (Ministry of Education of China) ; Fundamental Research Funds for the Central Universities (Ministry of Education of China) ; Fundamental Research Funds for the Central Universities (Ministry of Education of China) ; Fundamental Research Funds for the Central Universities (Ministry of Education of China) ; Fundamental Research Funds for the Central Universities (Ministry of Education of China) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Fundamental Research Funds for the Central Universities (Ministry of Education of China) ; Fundamental Research Funds for the Central Universities (Ministry of Education of China) ; Fundamental Research Funds for the Central Universities (Ministry of Education of China) ; Fundamental Research Funds for the Central Universities (Ministry of Education of China) ; Fundamental Research Funds for the Central Universities (Ministry of Education of China) ; Fundamental Research Funds for the Central Universities (Ministry of Education of China) ; Fundamental Research Funds for the Central Universities (Ministry of Education of China) ; Fundamental Research Funds for the Central Universities (Ministry of Education of China) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; Fundamental Research Funds for the Central Universities (Ministry of Education of China) ; 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Fundamental Research Funds for the Central Universities (Ministry of Education of China) ; Fundamental Research Funds for the Central Universities (Ministry of Education of China) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; 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源URL | [http://ir.ihb.ac.cn/handle/342005/27620] |
专题 | 水生生物研究所_鱼类生物学及渔业生物技术研究中心 |
通讯作者 | Tong, Jingou |
作者单位 | 1.Chinese Acad Sci, Innnovat Acad Seed Design, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Hubei, Peoples R China 2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 3.Southwest Univ, Key Lab Aquat Sci Chongqing, Sch Life Sci, Key Lab Freshwater Fish Reprod & Dev,Minist Educ, Chongqing 400715, Peoples R China |
推荐引用方式 GB/T 7714 | Fu, Beide,Yu, Xiaomu,Tong, Jingou,et al. Comparative transcriptomic analysis of hypothalamus-pituitary-liver axis in bighead carp (Hypophthalmichthys nobilis) with differential growth rate[J]. BMC GENOMICS,2019,20(1):8. |
APA | Fu, Beide.,Yu, Xiaomu.,Tong, Jingou.,Pang, Meixia.,Zhou, Ying.,...&Tao, Wenjing.(2019).Comparative transcriptomic analysis of hypothalamus-pituitary-liver axis in bighead carp (Hypophthalmichthys nobilis) with differential growth rate.BMC GENOMICS,20(1),8. |
MLA | Fu, Beide,et al."Comparative transcriptomic analysis of hypothalamus-pituitary-liver axis in bighead carp (Hypophthalmichthys nobilis) with differential growth rate".BMC GENOMICS 20.1(2019):8. |
入库方式: OAI收割
来源:水生生物研究所
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