Identification and analysis of differentially expressed microRNAs in rainbow trout (Oncorhynchus mykiss) responding to infectious hematopoietic necrosis virus infection
文献类型：期刊论文
| 作者 | Cao, Yongsheng1,2; Wang, Di1; Li, Shaowu1; Xu, Liming1; Zhao, Jingzhuang1; Liu, Hongbai1; Lu, Tongyan1; Zhang, Qiya2 |
| 刊名 | DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY
 |
| 出版日期 | 2018-11-01 |
| 卷号 | 88期号:1页码:28-36 |
| 关键词 | microRNA Rainbow trout IHNV Deep sequencing Functional analysis |
| ISSN号 | 0145-305X |
| DOI | 10.1016/j.dci.2018.07.004 |
| 英文摘要 | MicroRNAs (miRNAs) are a class of regulators essential for numerous biological processes. Infectious hematopoietic necrosis virus (IHNV) is one of the most important viral pathogens in salmon and trout. In this study, the miRNA expression profiles of rainbow trout upon IHNV infection were explored. In total, 392 known miRNAs and 936 novel miRNAs were identified. Twelve known and 13 novel miRNAs were differentially expressed between infected and uninfected fish. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses revealed that certain miRNA target genes were associated with biological regulation, the immune system, and signal transduction. In addition, over- and suppressed expression of miR-146a-3p, miR-155-5p, miR-216a-5p, and miR-499b-5p could respectively increase and decrease viral gene expression in cells and viral titers. MiR-146a-3p and miR-216a-5p inhibited the expression of type-I IFN and the Mxl gene induced by IHNV. These results provide preliminary insights into the IHNV-host interactions mediated by miRNAs. |
| WOS关键词 | GROUPER EPINEPHELUS-COIOIDES ; SIGNALING PATHWAY ; VHSV INFECTION ; MIIUY CROAKER ; TELEOST FISH ; APOPTOSIS ; PROFILE ; CELLS ; RNA ; PROLIFERATION |
| 资助项目 | Central-level Nonprofit Scientific Research Institutes Special Funds[HSY201702M] ; Natural Science Foundation of Heilongjiang Province of China[C2018073] ; State Key Laboratory of Freshwater Ecology and Biotechnology[2017FB03] ; China Postdoctoral Science Foundation[2016M602395] ; Central Public-interest Scientific Institution Basal Research Fund, CAFS[2017HY-ZD1009] ; Earmarked Fund for China Agriculture Research System[CARS-46] |
| WOS研究方向 | Fisheries ; Immunology ; Zoology |
| 语种 | 英语 |
| WOS记录号 | WOS:000443668600004 |
| 出版者 | ELSEVIER SCI LTD |
| 资助机构 | Central-level Nonprofit Scientific Research Institutes Special Funds ; Central-level Nonprofit Scientific Research Institutes Special Funds ; Central-level Nonprofit Scientific Research Institutes Special Funds ; Central-level Nonprofit Scientific Research Institutes Special Funds ; Central-level Nonprofit Scientific Research Institutes Special Funds ; Central-level Nonprofit Scientific Research Institutes Special Funds ; Central-level Nonprofit Scientific Research Institutes Special Funds ; Central-level Nonprofit Scientific Research Institutes Special Funds ; Natural Science Foundation of Heilongjiang Province of China ; Natural Science Foundation of Heilongjiang Province of China ; Natural Science Foundation of Heilongjiang Province of China ; Natural Science Foundation of Heilongjiang Province of China ; Natural Science Foundation of Heilongjiang Province of China ; Natural Science Foundation of Heilongjiang Province of China ; Natural Science Foundation of Heilongjiang Province of China ; Natural Science Foundation of Heilongjiang Province of China ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; State Key Laboratory of Freshwater Ecology and Biotechnology ; China Postdoctoral Science Foundation ; China Postdoctoral Science Foundation ; China Postdoctoral Science Foundation ; China Postdoctoral Science Foundation ; China Postdoctoral Science Foundation ; China Postdoctoral Science Foundation ; China Postdoctoral Science Foundation ; China Postdoctoral Science Foundation ; Central Public-interest Scientific Institution Basal Research Fund, CAFS ; Central Public-interest Scientific Institution Basal Research Fund, CAFS ; 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| 源URL | [http://ir.ihb.ac.cn/handle/342005/29410]  |
| 专题 | 水生生物研究所_鱼类生物学及渔业生物技术研究中心_期刊论文 |
| 通讯作者 | Lu, Tongyan; Zhang, Qiya |
| 作者单位 | 1.Chinese Acad Fishery Sci, Heilongjiang River Fisheries Res Inst, Dept Aquaculture, Lab Fish Dis, Songfa St 43, Harbin 150070, Heilongjiang, Peoples R China 2.Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Hubei, Peoples R China |
| 推荐引用方式 GB/T 7714 | Cao, Yongsheng,Wang, Di,Li, Shaowu,et al. Identification and analysis of differentially expressed microRNAs in rainbow trout (Oncorhynchus mykiss) responding to infectious hematopoietic necrosis virus infection[J]. DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY,2018,88(1):28-36. |
| APA | Cao, Yongsheng.,Wang, Di.,Li, Shaowu.,Xu, Liming.,Zhao, Jingzhuang.,...&Zhang, Qiya.(2018).Identification and analysis of differentially expressed microRNAs in rainbow trout (Oncorhynchus mykiss) responding to infectious hematopoietic necrosis virus infection.DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY,88(1),28-36. |
| MLA | Cao, Yongsheng,et al."Identification and analysis of differentially expressed microRNAs in rainbow trout (Oncorhynchus mykiss) responding to infectious hematopoietic necrosis virus infection".DEVELOPMENTAL AND COMPARATIVE IMMUNOLOGY 88.1(2018):28-36. |
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来源：水生生物研究所
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