De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians
文献类型：期刊论文
| 作者 | Teng Wen1,2 ; Cong Rihao1,3,4; Que Huayong1,3,4; Zhang Guofan1,3,4
|
| 刊名 | JOURNAL OF OCEANOLOGY AND LIMNOLOGY
 |
| 出版日期 | 2018-07-01 |
| 卷号 | 36期号:4页码:1408-1416 |
| 关键词 | molluscs shell coloration differentially expressed genes gene ontology |
| ISSN号 | 2096-5508 |
| DOI | 10.1007/s00343-018-7063-3 |
| 通讯作者 | Que Huayong(hque@qdio.ac.cn) |
| 英文摘要 | Molluscan shell color has received persistent attention for its distinctive diversity and complexity. In the present study, six transcriptome libraries obtained from two developmental stages, pre-pigmentation and post-pigmentation, were used for paired-end sequencing in the bay scallop Argopecten irradians. In total, 289 839 646 paired-end reads were assembled into 70 929 transcripts. Using BLASTX and BLASTN, 30 896 unigenes were successfully annotated against the SWISS-PROT, NR, and KOG database. Gene ontology annotation and Kyoto Encyclopedia of Genes and Genomes classification identified numbers of unigenes involved in biomineralization and pigmentation. Digital gene expression analysis revealed that melanin, trace metal elements and porphyrins are potentially involved in shell coloration of A. irradians. |
| 资助项目 | China Agriculture Research System[CARS-49] ; Science and Technology Service Network Initiative of Chinese Academy of Sciences |
| WOS研究方向 | Marine & Freshwater Biology ; Oceanography |
| 语种 | 英语 |
| WOS记录号 | WOS:000441231100035 |
| 出版者 | SCIENCE PRESS |
| 源URL | [http://ir.qdio.ac.cn/handle/337002/159937]  |
| 专题 | 中国科学院海洋研究所 |
| 通讯作者 | Que Huayong |
| 作者单位 | 1.Chinese Acad Sci, Inst Oceanol, Qingdao 266071, Peoples R China 2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 3.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao 266071, Peoples R China 4.Natl & Local Joint Engn Lab Ecol Mariculture, Qingdao 266000, Peoples R China |
| 推荐引用方式 GB/T 7714 | Teng Wen,Cong Rihao,Que Huayong,et al. De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians[J]. JOURNAL OF OCEANOLOGY AND LIMNOLOGY,2018,36(4):1408-1416. |
| APA | Teng Wen,Cong Rihao,Que Huayong,&Zhang Guofan.(2018).De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians.JOURNAL OF OCEANOLOGY AND LIMNOLOGY,36(4),1408-1416. |
| MLA | Teng Wen,et al."De novo transcriptome sequencing reveals candidate genes involved in orange shell coloration of bay scallop Argopecten irradians".JOURNAL OF OCEANOLOGY AND LIMNOLOGY 36.4(2018):1408-1416. |
入库方式： OAI收割
来源：海洋研究所
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