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Chinese Academy of Sciences Institutional Repositories Grid
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Characterization of the complete mitochondrial genome and phylogenetic analysis of Pelodiscus sinensis, a mutant Chinese soft-shell turtle

文献类型：期刊论文

作者Zhang, Jun1; Zhou, Qingyan1; Yang, Xiaoli1; Yu, Peng1,2,3; Zhou, Weishang1; Gui, Yuan1; Ouyang, Xia1; Wan, Quan1
刊名CONSERVATION GENETICS RESOURCES
出版日期2019-09-01
卷号11期号:3页码:279-282
关键词Pelodiscus sinensis Soft-shell turtle Mitochondrial genome Phylogeny
ISSN号1877-7252
DOI10.1007/s12686-018-1007-2
英文摘要

The Chinese soft-shell turtle (Pelodiscus sinensis, Testudines: Pelodiscus) shows geographical variation, and one strain is the inked turtle. Wild population numbers have dropped substantially during the past decades, and the species is now classed as vulnerable. However, little genetic data exists so this study aimed to sequence and analyze the complete mitochondrial genome. The circular double-stranded genome is 17,145 bp in length and contains 13 protein-coding genes (PCGs), two rRNA genes, 22 tRNA genes, an L-strand replication origin and a control region. The base composition is 35.5% A, 27.3% T, 11.8% G and 25.4% C, with an AT content of 62.8%. Trionychidae species were divided into two clades based on phylogenetic analysis, and the closest genetic distance was between Trionyx axenaria and P. sinensis. This study provides basic genetic data for future studies on conservation biology, phylogenetic and evolutionary analysis of this inked strain of the Chinese soft-shell turtle.

WOS关键词SEQUENCE
资助项目Anhui Natural Science Foundation of the Colleges and Universities[KJ2016A241] ; Open Project of National Key Laboratory of the Ecological and Biological Technology for Institute of Hydrobiology of Chinese Academy of Sciences[2016FB16] ; Key Youth Fund of Anhui Agricultural University[2015ZD05]
WOS研究方向Biodiversity & Conservation ; Genetics & Heredity
语种英语
WOS记录号WOS:000480748400008
出版者SPRINGER
资助机构Anhui Natural Science Foundation of the Colleges and Universities ; Anhui Natural Science Foundation of the Colleges and Universities ; Anhui Natural Science Foundation of the Colleges and Universities ; Anhui Natural Science Foundation of the Colleges and Universities ; Anhui Natural Science Foundation of the Colleges and Universities ; Anhui Natural Science Foundation of the Colleges and Universities ; Anhui Natural Science Foundation of the Colleges and Universities ; Anhui Natural Science Foundation of the Colleges and Universities ; Open Project of National Key Laboratory of the Ecological and Biological Technology for Institute of Hydrobiology of Chinese Academy of Sciences ; Open Project of National Key Laboratory of the Ecological and Biological Technology for Institute of Hydrobiology of Chinese Academy of Sciences ; Open Project of National Key Laboratory of the Ecological and Biological Technology for Institute of Hydrobiology of Chinese Academy of Sciences ; Open Project of National Key Laboratory of the Ecological and Biological Technology for Institute of Hydrobiology of Chinese Academy of Sciences ; Open Project of National Key Laboratory of the Ecological and Biological Technology for Institute of Hydrobiology of Chinese Academy of Sciences ; Open Project of National Key Laboratory of the Ecological and Biological Technology for Institute of Hydrobiology of Chinese Academy of Sciences ; Open Project of National Key Laboratory of the Ecological and Biological Technology for Institute of Hydrobiology of Chinese Academy of Sciences ; Open Project of National Key Laboratory of the Ecological and Biological Technology for Institute of Hydrobiology of Chinese Academy of Sciences ; Key Youth Fund of Anhui Agricultural University ; Key Youth Fund of Anhui Agricultural University ; Key Youth Fund of Anhui Agricultural University ; Key Youth Fund of Anhui Agricultural University ; Key Youth Fund of Anhui Agricultural University ; Key Youth Fund of Anhui Agricultural University ; Key Youth Fund of Anhui Agricultural University ; Key Youth Fund of Anhui Agricultural University ; Anhui Natural Science Foundation of the Colleges and Universities ; 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Open Project of National Key Laboratory of the Ecological and Biological Technology for Institute of Hydrobiology of Chinese Academy of Sciences ; Open Project of National Key Laboratory of the Ecological and Biological Technology for Institute of Hydrobiology of Chinese Academy of Sciences ; Open Project of National Key Laboratory of the Ecological and Biological Technology for Institute of Hydrobiology of Chinese Academy of Sciences ; Open Project of National Key Laboratory of the Ecological and Biological Technology for Institute of Hydrobiology of Chinese Academy of Sciences ; Key Youth Fund of Anhui Agricultural University ; Key Youth Fund of Anhui Agricultural University ; Key Youth Fund of Anhui Agricultural University ; Key Youth Fund of Anhui Agricultural University ; Key Youth Fund of Anhui Agricultural University ; Key Youth Fund of Anhui Agricultural University ; Key Youth Fund of Anhui Agricultural University ; Key Youth Fund of Anhui Agricultural University
源URL[http://ir.ihb.ac.cn/handle/342005/33183]  
专题水生生物研究所_淡水生态学研究中心_期刊论文
通讯作者Wan, Quan
作者单位1.Anhui Agr Univ, Coll Anim Sci & Technol, Hefei 230036, Anhui, Peoples R China
2.Chinese Acad Sci, Inst Hydrobiol, State Key Lab Freshwater Ecol & Biotechnol, Wuhan 430072, Peoples R China
3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
推荐引用方式
GB/T 7714		 Zhang, Jun,Zhou, Qingyan,Yang, Xiaoli,et al. Characterization of the complete mitochondrial genome and phylogenetic analysis of Pelodiscus sinensis, a mutant Chinese soft-shell turtle[J]. CONSERVATION GENETICS RESOURCES,2019,11(3):279-282.
APA Zhang, Jun.,Zhou, Qingyan.,Yang, Xiaoli.,Yu, Peng.,Zhou, Weishang.,...&Wan, Quan.(2019).Characterization of the complete mitochondrial genome and phylogenetic analysis of Pelodiscus sinensis, a mutant Chinese soft-shell turtle.CONSERVATION GENETICS RESOURCES,11(3),279-282.
MLA Zhang, Jun,et al."Characterization of the complete mitochondrial genome and phylogenetic analysis of Pelodiscus sinensis, a mutant Chinese soft-shell turtle".CONSERVATION GENETICS RESOURCES 11.3(2019):279-282.

入库方式： OAI收割

来源：水生生物研究所

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