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Constructing Weighted Gene Correlation Network on GPUs

文献类型：期刊论文

作者Yang, Guanghui1,2; Zhang, Sheng1; Tian, Yuan1; Lin, Ping1; Wan, Jiang-Feng1,2; Zhou, Qingguo3; Yang, Lei1; Hung, JC; Yen, NY; Li, KC
刊名FRONTIER COMPUTING: THEORY, TECHNOLOGIES AND APPLICATIONS
出版日期2016
卷号375页码:429-439
关键词Weighted network GPU Gene correlation expression Biological data analysis
ISSN号1876-1100
DOI10.1007/978-981-10-0539-8_43
英文摘要Here we constructed a weighted gene correlation network in human glioblastoma cells by developing the graphics processing units (GPUs) algorithm. The strength distributions of entire network, housekeeping genes and hubs in protein interaction network were calculated and the differences between them were found. Six definitions of clustering coefficient previously proposed for weighted networks were calculated in this paper and behaved quite differently. Interestingly, the clustering coefficient distributions of housekeeping genes and hubs are similar to that of entire network, as the strengths of them are generally bigger. This work explored how to calculate the network indices in weighted biological networks on GPUs and whether these indices can reflect the characteristics of biological networks.
WOS关键词SYSTEMS BIOLOGY ; ARCHITECTURE
WOS研究方向Computer Science ; Engineering
语种英语
WOS记录号WOS:000386254700044
出版者SPRINGER
源URL[http://119.78.100.186/handle/113462/56839]  
专题中国科学院近代物理研究所
通讯作者Yang, Lei
作者单位1.Chinese Acad Sci, Inst Modern Phys, 509 Nanchang Rd, Lanzhou 730000, Gansu, Peoples R China
2.Univ Chinese Acad Sci, 19A Yuquan Rd, Beijing 100049, Peoples R China
3.Lanzhou Univ, 222 Tianshuinan Rd, Lanzhou 730000, Gansu, Peoples R China
推荐引用方式
GB/T 7714		 Yang, Guanghui,Zhang, Sheng,Tian, Yuan,et al. Constructing Weighted Gene Correlation Network on GPUs[J]. FRONTIER COMPUTING: THEORY, TECHNOLOGIES AND APPLICATIONS,2016,375:429-439.
APA Yang, Guanghui.,Zhang, Sheng.,Tian, Yuan.,Lin, Ping.,Wan, Jiang-Feng.,...&Li, KC.(2016).Constructing Weighted Gene Correlation Network on GPUs.FRONTIER COMPUTING: THEORY, TECHNOLOGIES AND APPLICATIONS,375,429-439.
MLA Yang, Guanghui,et al."Constructing Weighted Gene Correlation Network on GPUs".FRONTIER COMPUTING: THEORY, TECHNOLOGIES AND APPLICATIONS 375(2016):429-439.

入库方式： OAI收割

来源：近代物理研究所

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