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RNAcentral: a hub of information for non-coding RNA sequences

文献类型：期刊论文

作者Orlic-Milacic, Marija1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44; Chan, Patricia P.1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44; Lowe, Todd M.1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44; Bruford, Elspeth1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,32,33,34,35,36,37,38,39,40,41,42,43,44; Seal, Ruth1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44; Vandesompele, Jo1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44; Volders, Pieter-Jan1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44; Paraskevopoulou, Maria1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44; Ma, Lina1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44; Zhang, Zhang1,2,3,4,5,6,7,8,9,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29,30,31,32,33,34,35,36,37,38,39,40,41,42,43,44
刊名NUCLEIC ACIDS RESEARCH
出版日期2019-01-08
卷号47期号:D1页码:D221-D229
ISSN号0305-1048
DOI10.1093/nar/gky1034
英文摘要RNAcentral is a comprehensive database of non-coding RNA (ncRNA) sequences, collating information on ncRNA sequences of all types from a broad range of organisms. We have recently added a new genome mapping pipeline that identifies genomic locations for ncRNA sequences in 296 species. We have also added several new types of functional annotations, such as tRNA secondary structures, Gene Ontology annotations, and miRNA-target interactions. A new quality control mechanism based on Rfam family assignments identifies potential contamination, incomplete sequences, and more. The RNAcentral database has become a vital component of many workflows in the RNA community, serving as both the primary source of sequence data for academic and commercial groups, as well as a source of stable accessions for the annotation of genomic and functional features. These examples are facilitated by an improved RNAcentral web interface, which features an updated genome browser, a new sequence feature viewer, and improved text search functionality. RNAcentral is freely available at https://rnacentral.org.
资助项目Biotechnology and Biological Sciences Research Council (BBSRC)[BB/N019199/1] ; Research Councils UK (RCUK)
WOS研究方向Biochemistry & Molecular Biology
语种英语
WOS记录号WOS:000462587400035
出版者OXFORD UNIV PRESS
源URL[http://119.78.100.204/handle/2XEOYT63/4145]  
专题中国科学院计算技术研究所期刊论文_英文
通讯作者Petrov, Anton I.
作者单位1.Univ Copenhagen, Ctr RNA Technol & Hlth, Gronnegardsvej 3, Frederiksberg C, Denmark
2.Univ Vienna, Dept Theoret Chem, Wahringerstr 17, A-1090 Vienna, Austria
3.Fraunhofer Inst Cell Therapy & Immunol, Perlickstr 1, D-04103 Leipzig, Germany
4.Max Planck Inst Math Sci, Insel Str 22, D-04103 Leipzig, Germany
5.Univ Leipzig, Leipzig Res Ctr Civilizat Dis, Ritterstr 9-13, D-04109 Leipzig, Germany
6.Univ Leipzig, Competence Ctr Scalable Data Serv & Solut Dresden, German Ctr Integrat Biodivers Res iDiv, Ritterstr 9-13, D-04109 Leipzig, Germany
7.Univ Leipzig, Interdisciplinary Ctr Bioinformat, Hartelstr 1618, D-04107 Leipzig, Germany
8.Univ Leipzig, Bioinformat Grp, Dept Comp Sci, Hartelstr 1618, D-04107 Leipzig, Germany
9.Sandia Natl Labs, Syst Biol Dept, Livermore, CA 94551 USA
10.Phoenix Bioinformat, Fremont, CA 94538 USA
推荐引用方式
GB/T 7714		 Orlic-Milacic, Marija,Chan, Patricia P.,Lowe, Todd M.,et al. RNAcentral: a hub of information for non-coding RNA sequences[J]. NUCLEIC ACIDS RESEARCH,2019,47(D1):D221-D229.
APA Orlic-Milacic, Marija.,Chan, Patricia P..,Lowe, Todd M..,Bruford, Elspeth.,Seal, Ruth.,...&Frankish, Adam.(2019).RNAcentral: a hub of information for non-coding RNA sequences.NUCLEIC ACIDS RESEARCH,47(D1),D221-D229.
MLA Orlic-Milacic, Marija,et al."RNAcentral: a hub of information for non-coding RNA sequences".NUCLEIC ACIDS RESEARCH 47.D1(2019):D221-D229.

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