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Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi)
文献类型：期刊论文
| 作者 | Matheny, P. Brandon; Wang, Zheng; Binder, Manfred; Curtis, Judd M.; Lim, Young Woon; Nilsson, R. Henrik; Hughes, Karen W.; Hofstetter, Valerie; Ammirati, Joseph F.; Schoch, Conrad L. |
| 刊名 | MOLECULAR PHYLOGENETICS AND EVOLUTION
 |
| 出版日期 | 2007-05-01 |
| 卷号 | 43期号:2页码:430-451 |
| 关键词 | Basidiomycota EF1-alpha fungi Introns RNA polymerase II systematics |
| ISSN号 | 1055-7903 |
| 通讯作者 | pmatheny@clarku.edu |
| 英文摘要 | A phylogeny of the fungal phylum Basidiomycota. is presented based on a survey of 160 taxa and five nuclear genes. Two genes, rpb2, and tef1, are presented in detail. The rpb2 gene is more variable than tef1 and recovers well-supported clades at shallow and deep taxonomic levels. The tef1 gene recovers some deep and ordinal-level relationships but with greater branch support from nucleotides compared to amino acids. Intron placement is dynamic in tef1, often lineage-specific, and diagnostic for many clades. Introns are fewer in rpb2 and tend to be highly conserved by position. When both protein-coding loci are combined with sequences of nuclear ribosomal RNA genes, 18 inclusive clades of Basidiomycota are strongly supported by Bayesian posterior probabilities and 16 by parsimony bootstrapping. These numbers are greater than produced by single genes and combined ribosomal RNA gene regions. Combination of nrDNA with amino acid sequences, or exons with third codon positions removed, produces strong measures of support, particularly for deep internodes of Basidiomycota, which have been difficult to resolve with confidence using nrDNA data alone. This study produces strong boostrap support and significant posterior probabilities for the first time for the following monophyletic groups: (1) Ustilagino-mycetes plus Hymenomycetes, (2) an inclusive cluster of hymenochaetoid, corticioid, polyporoid, Thelephorales, russuloid, athelioid, Boletales, and euagarics clades, (3) Thelephorales plus the polyporoid clade, (4) the polyporoid clade, and (5) the cantharelloid clade. Strong support is also recovered for the basal position of the Dacrymycetales in the Hymenomycetidae and paraphyly of the Exobasidiomycetidae. (C) 2006 Elsevier Inc. All rights reserved. |
| 学科主题 | Biochemistry & Molecular Biology; Evolutionary Biology; Genetics & Heredity |
| 类目[WOS] | Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity |
| 研究领域[WOS] | Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity |
| 关键词[WOS] | RIBOSOMAL DNA-SEQUENCES ; ELONGATION-FACTOR 1-ALPHA ; BETA-TUBULIN GENE ; RNA-POLYMERASE-II ; FORMING FUNGI ; LARGE-SUBUNIT ; EVOLUTIONARY RELATIONSHIPS ; CRYPTOCOCCUS-NEOFORMANS ; MOLECULAR SYSTEMATICS ; SCHIZOPHYLLUM-COMMUNE |
| 收录类别 | SCI |
| 语种 | 英语 |
| WOS记录号 | WOS:000246918800008 |
| 公开日期 | 2011-12-06 |
| 源URL | [http://ir.kib.ac.cn/handle/151853/2699]  |
| 专题 | 昆明植物研究所_中国科学院东亚植物多样性与生物地理学重点实验室 |
| 作者单位 | 1.Clark Univ, Dept Biol, Worcester, MA 01610 USA 2.Univ British Columbia, Dept Wood Sci, Vancouver, BC V6T 1Z4, Canada 3.Univ Gothenburg, Dept Plant & Environm Sci, SE-40530 Gothenburg, Sweden 4.Univ Tennessee, Dept Bot, Knoxville, TN 37996 USA 5.Duke Univ, Dept Biol, Durham, NC 27708 USA 6.Univ Washington, Dept Biol, Seattle, WA 98195 USA 7.Oregon State Univ, Corvallis, OR 97331 USA 8.Univ Kassel, Inst Biol, D-34132 Kassel, Germany 9.Univ Minnesota, Dept Plant Biol, St Paul, MN 55108 USA 10.Univ Copenhagen, Dept Microbiol, Inst Biol, DK-1353 Copenhagen K, Denmark |
| 推荐引用方式 GB/T 7714 | Matheny, P. Brandon,Wang, Zheng,Binder, Manfred,et al. Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi)[J]. MOLECULAR PHYLOGENETICS AND EVOLUTION,2007,43(2):430-451. |
| APA | Matheny, P. Brandon.,Wang, Zheng.,Binder, Manfred.,Curtis, Judd M..,Lim, Young Woon.,...&Hibbett, David S..(2007).Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi).MOLECULAR PHYLOGENETICS AND EVOLUTION,43(2),430-451. |
| MLA | Matheny, P. Brandon,et al."Contributions of rpb2 and tef1 to the phylogeny of mushrooms and allies (Basidiomycota, Fungi)".MOLECULAR PHYLOGENETICS AND EVOLUTION 43.2(2007):430-451. |
入库方式： OAI收割
来源：昆明植物研究所
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