Monomeric adenine decay dynamics influenced by the DNA environment
文献类型:期刊论文
作者 | Lu, You1; Lan, Zhenggang2; Thiel, Walter1 |
刊名 | JOURNAL OF COMPUTATIONAL CHEMISTRY
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出版日期 | 2012-05-15 |
卷号 | 33期号:13页码:1225-1235 |
关键词 | DNA fluorescence hydrogen bond nonadiabatic coupling surface hopping |
中文摘要 | We report on-the-fly surface-hopping dynamics simulations of single adenine embedded in solvated DNA oligomers, (dA)(10) and (dA)(10) ·(dT)(10) . Both model systems are found to decay from the S(1) to the S(0) state via distinct monomeric channels, on account of the strong hydrogen-bonding interactions between the Watson-Crick pair in the double-stranded oligomer. Surprisingly, the decay times (several picoseconds) for the current models are 10 times longer than those of adenine in the gas or aqueous phase, while matching one of the time constants observed experimentally. We discuss possible reasons for these longer decay times, including steric hindrance in the DNA strands, electronic effects of the environment, and the presence of other local excited-state minima. We present optimized geometries and relative energies for representative S(0) and S(1) minima as well as conical intersections related to the hopping events. We have also computed steady-state and time-dependent fluorescence spectra that may help understand the experimental observations. © 2012 Wiley Periodicals, Inc. |
英文摘要 | We report on-the-fly surface-hopping dynamics simulations of single adenine embedded in solvated DNA oligomers, (dA)10 and (dA)10.(dT)10. Both model systems are found to decay from the S1 to the S0 state via distinct monomeric channels, on account of the strong hydrogen-bonding interactions between the WatsonCrick pair in the double-stranded oligomer. Surprisingly, the decay times (several picoseconds) for the current models are 10 times longer than those of adenine in the gas or aqueous phase, while matching one of the time constants observed experimentally. We discuss possible reasons for these longer decay times, including steric hindrance in the DNA strands, electronic effects of the environment, and the presence of other local excited-state minima. We present optimized geometries and relative energies for representative S0 and S1 minima as well as conical intersections related to the hopping events. We have also computed steady-state and time-dependent fluorescence spectra that may help understand the experimental observations. (c) 2012 Wiley Periodicals, Inc. |
WOS标题词 | Science & Technology ; Physical Sciences |
学科主题 | 仿真与模拟 |
类目[WOS] | Chemistry, Multidisciplinary |
研究领域[WOS] | Chemistry |
关键词[WOS] | EXCITED-STATE DYNAMICS ; QUANTUM-MECHANICAL CALCULATIONS ; DIFFERENTIAL-OVERLAP TECHNIQUE ; ANALYTICAL 1ST DERIVATIVES ; PROTON-TRANSFER PROCESSES ; EMPIRICAL FORCE-FIELD ; A-T DNA ; MOLECULAR-DYNAMICS ; BASE-PAIRS ; SEMIEMPIRICAL METHODS |
收录类别 | SCI |
语种 | 英语 |
WOS记录号 | WOS:000302721600001 |
公开日期 | 2012-11-12 |
源URL | [http://ir.qibebt.ac.cn:8080/handle/337004/1307] ![]() |
专题 | 青岛生物能源与过程研究所_仿真模拟团队 |
作者单位 | 1.Max Planck Inst Kohlenforsch, D-45470 Mulheim, Germany 2.Chinese Acad Sci, Qingdao Inst Bioenergy & Bioproc Technol, Qingdao 266101, Shandong, Peoples R China |
推荐引用方式 GB/T 7714 | Lu, You,Lan, Zhenggang,Thiel, Walter. Monomeric adenine decay dynamics influenced by the DNA environment[J]. JOURNAL OF COMPUTATIONAL CHEMISTRY,2012,33(13):1225-1235. |
APA | Lu, You,Lan, Zhenggang,&Thiel, Walter.(2012).Monomeric adenine decay dynamics influenced by the DNA environment.JOURNAL OF COMPUTATIONAL CHEMISTRY,33(13),1225-1235. |
MLA | Lu, You,et al."Monomeric adenine decay dynamics influenced by the DNA environment".JOURNAL OF COMPUTATIONAL CHEMISTRY 33.13(2012):1225-1235. |
入库方式: OAI收割
来源:青岛生物能源与过程研究所
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