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Chinese Academy of Sciences Institutional Repositories Grid
Monomeric adenine decay dynamics influenced by the DNA environment

文献类型:期刊论文

作者Lu, You1; Lan, Zhenggang2; Thiel, Walter1
刊名JOURNAL OF COMPUTATIONAL CHEMISTRY
出版日期2012-05-15
卷号33期号:13页码:1225-1235
关键词DNA fluorescence hydrogen bond nonadiabatic coupling surface hopping
中文摘要

We report on-the-fly surface-hopping dynamics simulations of single adenine embedded in solvated DNA oligomers, (dA)(10) and (dA)(10) ·(dT)(10) . Both model systems are found to decay from the S(1) to the S(0) state via distinct monomeric channels, on account of the strong hydrogen-bonding interactions between the Watson-Crick pair in the double-stranded oligomer. Surprisingly, the decay times (several picoseconds) for the current models are 10 times longer than those of adenine in the gas or aqueous phase, while matching one of the time constants observed experimentally. We discuss possible reasons for these longer decay times, including steric hindrance in the DNA strands, electronic effects of the environment, and the presence of other local excited-state minima. We present optimized geometries and relative energies for representative S(0) and S(1) minima as well as conical intersections related to the hopping events. We have also computed steady-state and time-dependent fluorescence spectra that may help understand the experimental observations. © 2012 Wiley Periodicals, Inc.

英文摘要We report on-the-fly surface-hopping dynamics simulations of single adenine embedded in solvated DNA oligomers, (dA)10 and (dA)10.(dT)10. Both model systems are found to decay from the S1 to the S0 state via distinct monomeric channels, on account of the strong hydrogen-bonding interactions between the WatsonCrick pair in the double-stranded oligomer. Surprisingly, the decay times (several picoseconds) for the current models are 10 times longer than those of adenine in the gas or aqueous phase, while matching one of the time constants observed experimentally. We discuss possible reasons for these longer decay times, including steric hindrance in the DNA strands, electronic effects of the environment, and the presence of other local excited-state minima. We present optimized geometries and relative energies for representative S0 and S1 minima as well as conical intersections related to the hopping events. We have also computed steady-state and time-dependent fluorescence spectra that may help understand the experimental observations. (c) 2012 Wiley Periodicals, Inc.
WOS标题词Science & Technology ; Physical Sciences
学科主题仿真与模拟
类目[WOS]Chemistry, Multidisciplinary
研究领域[WOS]Chemistry
关键词[WOS]EXCITED-STATE DYNAMICS ; QUANTUM-MECHANICAL CALCULATIONS ; DIFFERENTIAL-OVERLAP TECHNIQUE ; ANALYTICAL 1ST DERIVATIVES ; PROTON-TRANSFER PROCESSES ; EMPIRICAL FORCE-FIELD ; A-T DNA ; MOLECULAR-DYNAMICS ; BASE-PAIRS ; SEMIEMPIRICAL METHODS
收录类别SCI
语种英语
WOS记录号WOS:000302721600001
公开日期2012-11-12
源URL[http://ir.qibebt.ac.cn:8080/handle/337004/1307]  
专题青岛生物能源与过程研究所_仿真模拟团队
作者单位1.Max Planck Inst Kohlenforsch, D-45470 Mulheim, Germany
2.Chinese Acad Sci, Qingdao Inst Bioenergy & Bioproc Technol, Qingdao 266101, Shandong, Peoples R China
推荐引用方式
GB/T 7714
Lu, You,Lan, Zhenggang,Thiel, Walter. Monomeric adenine decay dynamics influenced by the DNA environment[J]. JOURNAL OF COMPUTATIONAL CHEMISTRY,2012,33(13):1225-1235.
APA Lu, You,Lan, Zhenggang,&Thiel, Walter.(2012).Monomeric adenine decay dynamics influenced by the DNA environment.JOURNAL OF COMPUTATIONAL CHEMISTRY,33(13),1225-1235.
MLA Lu, You,et al."Monomeric adenine decay dynamics influenced by the DNA environment".JOURNAL OF COMPUTATIONAL CHEMISTRY 33.13(2012):1225-1235.

入库方式: OAI收割

来源:青岛生物能源与过程研究所

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