The complete mitogenome sequence of a cave loach Triplophysa rosa (Teleostei, Balitoridae, Nemacheilinae)
文献类型：期刊论文
| 作者 | Wang, Jinjin1; Tang, Qiongying2; Wang, Zhijian1; Zhang, Yaoguang1; Wu, Qing3; Peng, Zuogang1 |
| 刊名 | MITOCHONDRIAL DNA
 |
| 出版日期 | 2012-10-01 |
| 卷号 | 23期号:5页码:366-368 |
| 关键词 | Cavefish Triplophysa rosa mitogenome molecular clock |
| ISSN号 | 1940-1736 |
| 通讯作者 | Peng, ZG (reprint author), Southwest Univ, Sch Life Sci, Key Lab Freshwater Fish Reprod & Dev, Minist Educ,Key Lab Aquat Sci Chongqing, Chongqing 400715, Peoples R China. |
| 中文摘要 | China is very rich in cavefishes and some detailed studies on their taxonomy and biology have been carried out, but many other aspects such as genetics and evolution need further investigation. Here, we sequenced the complete mitogenome sequence of the Rose Blind Plateau Loach, Triplophysa rosa, and combined with other 27 ostariophysan complete mitogenome sequences, the phylogenetic position of T. rosa was estimated. The 16,585 bp mitogenome of T. rosa was a typical vertebrate mitochondrial genome containing 13 protein-coding, 2 rRNA, 22 tRNA genes, and 1 control region (CR). The CR of T. rosa was characterized by one termination-associated sequence and seven conserved sequence blocks (CSB-B, D, E, F, and CSB I, II, III). Phylogenetic analyses showed that T. rosa belongs to the subfamily Nemacheilinae and formed a sister-group relationship with the genus Barbatula. Further analyses based on the concatenated mitochondrial cyt b and D-loop sequences showed that T. rosa clustered with other Triplophysa species, and it was located in the basal position within the genus. In addition, the molecular clock estimations showed that T. rosa might have diverged from other Triplophysa species at about 48.3 million years ago during the rapid uplift period of the Qinghai-Tibetan Plateau. |
| 英文摘要 | China is very rich in cavefishes and some detailed studies on their taxonomy and biology have been carried out, but many other aspects such as genetics and evolution need further investigation. Here, we sequenced the complete mitogenome sequence of the Rose Blind Plateau Loach, Triplophysa rosa, and combined with other 27 ostariophysan complete mitogenome sequences, the phylogenetic position of T. rosa was estimated. The 16,585 bp mitogenome of T. rosa was a typical vertebrate mitochondrial genome containing 13 protein-coding, 2 rRNA, 22 tRNA genes, and 1 control region (CR). The CR of T. rosa was characterized by one termination-associated sequence and seven conserved sequence blocks (CSB-B, D, E, F, and CSB I, II, III). Phylogenetic analyses showed that T. rosa belongs to the subfamily Nemacheilinae and formed a sister-group relationship with the genus Barbatula. Further analyses based on the concatenated mitochondrial cyt b and D-loop sequences showed that T. rosa clustered with other Triplophysa species, and it was located in the basal position within the genus. In addition, the molecular clock estimations showed that T. rosa might have diverged from other Triplophysa species at about 48.3 million years ago during the rapid uplift period of the Qinghai-Tibetan Plateau. |
| WOS标题词 | Science & Technology ; Life Sciences & Biomedicine |
| 类目[WOS] | Genetics & Heredity |
| 研究领域[WOS] | Genetics & Heredity |
| 关键词[WOS] | MITOCHONDRIAL-DNA ; GENOME |
| 收录类别 | SCI |
| 资助信息 | National Natural Science Foundation of China [30700072, 31071903]; National Basic Research (973) special preliminary study program [2010CB134405]; Fundamental Research Funds for the Central Universities [XDJK2011B010] |
| 语种 | 英语 |
| WOS记录号 | WOS:000309556900014 |
| 公开日期 | 2013-01-09 |
| 源URL | [http://ir.ihb.ac.cn/handle/342005/17154]  |
| 专题 | 水生生物研究所_水生生物多样性与资源保护研究中心_期刊论文 |
| 作者单位 | 1.Southwest Univ, Sch Life Sci, Key Lab Freshwater Fish Reprod & Dev, Minist Educ,Key Lab Aquat Sci Chongqing, Chongqing 400715, Peoples R China 2.Chinese Acad Sci, Key Lab Biodivers & Conservat Aquat Organisms, Inst Hydrobiol, Wuhan 430072, Peoples R China 3.Southwest Univ, Dept Fisheries, Chongqing 402460, Peoples R China |
| 推荐引用方式 GB/T 7714 | Wang, Jinjin,Tang, Qiongying,Wang, Zhijian,et al. The complete mitogenome sequence of a cave loach Triplophysa rosa (Teleostei, Balitoridae, Nemacheilinae)[J]. MITOCHONDRIAL DNA,2012,23(5):366-368. |
| APA | Wang, Jinjin,Tang, Qiongying,Wang, Zhijian,Zhang, Yaoguang,Wu, Qing,&Peng, Zuogang.(2012).The complete mitogenome sequence of a cave loach Triplophysa rosa (Teleostei, Balitoridae, Nemacheilinae).MITOCHONDRIAL DNA,23(5),366-368. |
| MLA | Wang, Jinjin,et al."The complete mitogenome sequence of a cave loach Triplophysa rosa (Teleostei, Balitoridae, Nemacheilinae)".MITOCHONDRIAL DNA 23.5(2012):366-368. |
入库方式： OAI收割
来源：水生生物研究所
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