Integrating multi-origin expression data improves the resolution of deep phylogeny of ray-finned fish (Actinopterygii)
文献类型：期刊论文
| 作者 | Zou, Ming1,2; Guo, Baocheng3,4; Tao, Wenjing1,2; Arratia, Gloria5; He, Shunping1 |
| 刊名 | SCIENTIFIC REPORTS
 |
| 出版日期 | 2012-09-18 |
| 卷号 | 2期号:- |
| 关键词 | HIGHER TELEOSTEAN PHYLOGENIES MITOCHONDRIAL-DNA SEQUENCES MITOGENOMIC PERSPECTIVE MOLECULAR PHYLOGENIES MISSING DATA TIME-SCALE TREE INTERRELATIONSHIPS INFERENCE SELECTION |
| ISSN号 | 2045-2322 |
| 通讯作者 | He, SP (reprint author), Chinese Acad Sci, Inst Hydrobiol, Key Lab Aquat Biodivers & Conservat, Wuhan 430072, Peoples R China. |
| 中文摘要 | The actinopterygians comprise nearly one-half of all extant vertebrate species and are very important for human well-being. However, the phylogenetic relationships among certain groups within the actinopterygians are still uncertain, and debates about these relationships have continued for a long time. Along with the progress achieved in sequencing technologies, phylogenetic analyses based on multi-gene sequences, termed phylogenomic approaches, are becoming increasingly common and often result in well-resolved and highly supported phylogenetic hypotheses. Based on the transcriptome sequences generated in this study and the extensive expression data currently available from public databases, we obtained alignments of 274 orthologue groups for 26 scientifically and commercially important actinopterygians, representing 17 out of 44 orders within the class Actinopterygii. Using these alignments and probabilistic methods, we recovered relationships between basal actinopterygians and teleosts, among teleosts within protacanthopterygians and related lineages, and also within acanthomorphs. These relationships were recovered with high confidence. |
| 英文摘要 | The actinopterygians comprise nearly one-half of all extant vertebrate species and are very important for human well-being. However, the phylogenetic relationships among certain groups within the actinopterygians are still uncertain, and debates about these relationships have continued for a long time. Along with the progress achieved in sequencing technologies, phylogenetic analyses based on multi-gene sequences, termed phylogenomic approaches, are becoming increasingly common and often result in well-resolved and highly supported phylogenetic hypotheses. Based on the transcriptome sequences generated in this study and the extensive expression data currently available from public databases, we obtained alignments of 274 orthologue groups for 26 scientifically and commercially important actinopterygians, representing 17 out of 44 orders within the class Actinopterygii. Using these alignments and probabilistic methods, we recovered relationships between basal actinopterygians and teleosts, among teleosts within protacanthopterygians and related lineages, and also within acanthomorphs. These relationships were recovered with high confidence. |
| WOS标题词 | Science & Technology |
| 类目[WOS] | Multidisciplinary Sciences |
| 研究领域[WOS] | Science & Technology - Other Topics |
| 关键词[WOS] | HIGHER TELEOSTEAN PHYLOGENIES ; MITOCHONDRIAL-DNA SEQUENCES ; MITOGENOMIC PERSPECTIVE ; MOLECULAR PHYLOGENIES ; MISSING DATA ; TIME-SCALE ; TREE ; INTERRELATIONSHIPS ; INFERENCE ; SELECTION |
| 收录类别 | SCI |
| 资助信息 | Major State Basic Research Development Program of China (973 Program) [2007CB411601] |
| 语种 | 英语 |
| WOS记录号 | WOS:000308863000001 |
| 公开日期 | 2013-01-09 |
| 源URL | [http://ir.ihb.ac.cn/handle/342005/17158]  |
| 专题 | 水生生物研究所_水生生物多样性与资源保护研究中心_期刊论文 |
| 作者单位 | 1.Chinese Acad Sci, Inst Hydrobiol, Key Lab Aquat Biodivers & Conservat, Wuhan 430072, Peoples R China 2.Chinese Acad Sci, Grad Univ, Beijing 100039, Peoples R China 3.Univ Zurich, Inst Evolutionary Biol & Environm Studies, CH-8057 Zurich, Switzerland 4.Swiss Inst Bioinformat, CH-1015 Lausanne, Switzerland 5.Univ Kansas, Biodivers Res Inst, Lawrence, KS 66045 USA |
| 推荐引用方式 GB/T 7714 | Zou, Ming,Guo, Baocheng,Tao, Wenjing,et al. Integrating multi-origin expression data improves the resolution of deep phylogeny of ray-finned fish (Actinopterygii)[J]. SCIENTIFIC REPORTS,2012,2(-). |
| APA | Zou, Ming,Guo, Baocheng,Tao, Wenjing,Arratia, Gloria,&He, Shunping.(2012).Integrating multi-origin expression data improves the resolution of deep phylogeny of ray-finned fish (Actinopterygii).SCIENTIFIC REPORTS,2(-). |
| MLA | Zou, Ming,et al."Integrating multi-origin expression data improves the resolution of deep phylogeny of ray-finned fish (Actinopterygii)".SCIENTIFIC REPORTS 2.-(2012). |
入库方式： OAI收割
来源：水生生物研究所
浏览0
下载0
收藏0
其他版本
除非特别说明，本系统中所有内容都受版权保护，并保留所有权利。