Cyprinid phylogeny based on Bayesian and maximum likelihood analyses of partitioned data: implications for Cyprinidae systematics
文献类型：期刊论文
| 作者 | Wang XuZhen1; Gan XiaoNi1; Li JunBing1; Mayden, Richard L.2; He ShunPing1 |
| 刊名 | SCIENCE CHINA-LIFE SCIENCES
 |
| 出版日期 | 2012-09-01 |
| 卷号 | 55期号:9页码:761-773 |
| 关键词 | Cyprinidae phylogeny molecular dating partitioned analyses |
| ISSN号 | 1674-7305 |
| 通讯作者 | He, SP (reprint author), Chinese Acad Sci, Key Lab Aquat Biodivers & Conservat, Inst Hydrobiol, Wuhan 430072, Peoples R China. |
| 中文摘要 | Cyprinidae is the biggest family of freshwater fish, but the phylogenetic relationships among its higher-level taxa are not yet fully resolved. In this study, we used the nuclear recombination activating gene 2 and the mitochondrial 16S ribosomal RNA and cytochrome b genes to reconstruct cyprinid phylogeny. Our aims were to (i) demonstrate the effects of partitioned phylogenetic analyses on phylogeny reconstruction of cyprinid fishes; (ii) provide new insights into the phylogeny of cyprinids. Our study indicated that unpartitioned strategy was optimal for our analyses; partitioned analyses did not provide better-resolved or -supported estimates of cyprinid phylogeny. Bayesian analyses support the following relationships among the major monophyletic groups within Cyprinidae: (Cyprininae, Labeoninae), ((Acheilognathinae, ((Leuciscinae, Tincinae), Gobioninae)), Xenocyprininae). The placement of Danioninae was poorly resolved. Estimates of divergence dates within the family showed that radiation of the major cyprinid groups occurred during the Late Oligocene through the Late Miocene. Our phylogenetic analyses improved our understanding of the evolutionary history of this important fish family. |
| 英文摘要 | Cyprinidae is the biggest family of freshwater fish, but the phylogenetic relationships among its higher-level taxa are not yet fully resolved. In this study, we used the nuclear recombination activating gene 2 and the mitochondrial 16S ribosomal RNA and cytochrome b genes to reconstruct cyprinid phylogeny. Our aims were to (i) demonstrate the effects of partitioned phylogenetic analyses on phylogeny reconstruction of cyprinid fishes; (ii) provide new insights into the phylogeny of cyprinids. Our study indicated that unpartitioned strategy was optimal for our analyses; partitioned analyses did not provide better-resolved or -supported estimates of cyprinid phylogeny. Bayesian analyses support the following relationships among the major monophyletic groups within Cyprinidae: (Cyprininae, Labeoninae), ((Acheilognathinae, ((Leuciscinae, Tincinae), Gobioninae)), Xenocyprininae). The placement of Danioninae was poorly resolved. Estimates of divergence dates within the family showed that radiation of the major cyprinid groups occurred during the Late Oligocene through the Late Miocene. Our phylogenetic analyses improved our understanding of the evolutionary history of this important fish family. |
| WOS标题词 | Science & Technology ; Life Sciences & Biomedicine |
| 类目[WOS] | Biology |
| 研究领域[WOS] | Life Sciences & Biomedicine - Other Topics |
| 关键词[WOS] | CYTOCHROME-B SEQUENCES ; EUROPEAN CYPRINIDS ; MIXED MODELS ; MOLECULAR SYSTEMATICS ; FISHES TELEOSTEI ; DIVERGENCE TIMES ; CONTROL REGION ; SELECTION ; BIOGEOGRAPHY ; EVOLUTION |
| 收录类别 | SCI |
| 资助信息 | National Natural Science Foundation of China [30770300]; Chinese Academy of Sciences [KSCX2-EW-Q-12]; Cypriniformes Tree of Life Initiative by the USA National Science Foundation [EF-0431326] |
| 语种 | 英语 |
| WOS记录号 | WOS:000309236200003 |
| 公开日期 | 2013-01-09 |
| 源URL | [http://ir.ihb.ac.cn/handle/342005/17160]  |
| 专题 | 水生生物研究所_水生生物多样性与资源保护研究中心_期刊论文 |
| 作者单位 | 1.Chinese Acad Sci, Key Lab Aquat Biodivers & Conservat, Inst Hydrobiol, Wuhan 430072, Peoples R China 2.St Louis Univ, Dept Biol, St Louis, MO 63103 USA |
| 推荐引用方式 GB/T 7714 | Wang XuZhen,Gan XiaoNi,Li JunBing,et al. Cyprinid phylogeny based on Bayesian and maximum likelihood analyses of partitioned data: implications for Cyprinidae systematics[J]. SCIENCE CHINA-LIFE SCIENCES,2012,55(9):761-773. |
| APA | Wang XuZhen,Gan XiaoNi,Li JunBing,Mayden, Richard L.,&He ShunPing.(2012).Cyprinid phylogeny based on Bayesian and maximum likelihood analyses of partitioned data: implications for Cyprinidae systematics.SCIENCE CHINA-LIFE SCIENCES,55(9),761-773. |
| MLA | Wang XuZhen,et al."Cyprinid phylogeny based on Bayesian and maximum likelihood analyses of partitioned data: implications for Cyprinidae systematics".SCIENCE CHINA-LIFE SCIENCES 55.9(2012):761-773. |
入库方式： OAI收割
来源：水生生物研究所
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