IndexToolkit: an open source toolbox to index protein databases for high-throughput proteomics
文献类型：期刊论文
| 作者 | Li, Dequan; Gao, Wen; Ling, Charles X.; Wang, Xiaobiao; Sun, Ruixiang; He, Simin |
| 刊名 | BIOINFORMATICS
 |
| 出版日期 | 2006-10-15 |
| 卷号 | 22期号:20页码:2572-2573 |
| ISSN号 | 1367-4803 |
| DOI | 10.1093/bioinformatics/btl410 |
| 英文摘要 | A software package, IndexToolkit, aimed at overcoming the disadvantage of FASTA-format databases for frequent searching, is developed to utilize an indexing strategy to substantially accelerate sequence queries. IndexToolkit includes user-friendly tools and an Application Programming Interface (API) to facilitate indexing, storage and retrieval of protein sequence databases. As open source, it provides a sequence-retrieval developing framework, which is easily extensible for high-speed-request proteomic applications, such as database searching or modification discovering. We applied IndexToolkit to database searching engine pFind to demonstrate its effect. Experimental studies show that IndexToolkit is able to support significantly faster searches of protein database. |
| WOS研究方向 | Biochemistry & Molecular Biology ; Biotechnology & Applied Microbiology ; Computer Science ; Mathematical & Computational Biology ; Mathematics |
| 语种 | 英语 |
| WOS记录号 | WOS:000241271300023 |
| 出版者 | OXFORD UNIV PRESS |
| 源URL | [http://119.78.100.204/handle/2XEOYT63/10381]  |
| 专题 | 中国科学院计算技术研究所期刊论文_英文 |
| 通讯作者 | Li, Dequan |
| 作者单位 | 1.Chinese Acad Sci, Inst Comp Technol, Beijing 100080, Peoples R China 2.Chinese Acad Sci, Grad Univ, Beijing 100039, Peoples R China 3.Univ Western Ontario, Dept Comp Sci, London, ON N6A 3K7, Canada |
| 推荐引用方式 GB/T 7714 | Li, Dequan,Gao, Wen,Ling, Charles X.,et al. IndexToolkit: an open source toolbox to index protein databases for high-throughput proteomics[J]. BIOINFORMATICS,2006,22(20):2572-2573. |
| APA | Li, Dequan,Gao, Wen,Ling, Charles X.,Wang, Xiaobiao,Sun, Ruixiang,&He, Simin.(2006).IndexToolkit: an open source toolbox to index protein databases for high-throughput proteomics.BIOINFORMATICS,22(20),2572-2573. |
| MLA | Li, Dequan,et al."IndexToolkit: an open source toolbox to index protein databases for high-throughput proteomics".BIOINFORMATICS 22.20(2006):2572-2573. |
入库方式： OAI收割
来源：计算技术研究所
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