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TreeFam: a curated database of phylogenetic trees of animal gene families
文献类型：期刊论文
| 作者 | Li, Heng; Coghlan, Avril; Ruan, Jue; Coin, Lachlan James; Heriche, Jean-Karim; Osmotherly, Lara; Li, Ruiqiang; Liu, Tao; Zhang, Zhang; Bolund, Lars |
| 刊名 | NUCLEIC ACIDS RESEARCH
 |
| 出版日期 | 2006 |
| 卷号 | 34页码:D572-D580 |
| ISSN号 | 0305-1048 |
| DOI | 10.1093/nar/gkj118 |
| 英文摘要 | TreeFam is a database of phylogenetic trees of gene families found in animals. It aims to develop a curated resource that presents the accurate evolutionary history of all animal gene families, as well as reliable ortholog and paralog assignments. Curated families are being added progressively, based on seed alignments and trees in a similar fashion to Pfam. Release 1.1 of TreeFam contains curated trees for 690 families 25 and automatically generated trees for another 11 646 families. These represent over 128 000 genes from nine fully sequenced animal genomes and over 45 000 other animal proteins from UniProt; similar to 40 - 85% of proteins encoded in the fully sequenced animal genomes are included in TreeFam. TreeFam is freely available at http://www.treefam.org and http://treefam.genomics.org.cn. |
| WOS研究方向 | Biochemistry & Molecular Biology |
| 语种 | 英语 |
| 出版者 | OXFORD UNIV PRESS |
| WOS记录号 | WOS:000239307700123 |
| 源URL | [http://119.78.100.204/handle/2XEOYT63/10717]  |
| 专题 | 中国科学院计算技术研究所期刊论文_英文 |
| 通讯作者 | Durbin, Richard |
| 作者单位 | 1.Wellcome Trust Sanger Inst, Cambridge CB10 1SA, England 2.Chinese Acad Sci, Beijing Inst Gen, Beijing Gen Inst, Beijing 101300, Peoples R China 3.Chinese Acad Sci, Inst Theoret Phys, Beijing 100080, Peoples R China 4.Univ Aarhus, Inst Human Genet, DK-8000 Aarhus C, Denmark 5.Univ So Denmark, Dept Biochem & Mol Biol, DK-5230 Odense M, Denmark 6.Chinese Acad Sci, Inst Comp Technol, Beijing 100080, Peoples R China 7.Univ Washington, Dept Med, Genome Ctr, Seattle, WA 98195 USA 8.Joint Genome Inst, Evolutionary Gen Dept, Dept Energy, Walnut Creek, CA USA 9.Lawrence Berkeley Lab, Walnut Creek, CA USA |
| 推荐引用方式 GB/T 7714 | Li, Heng,Coghlan, Avril,Ruan, Jue,et al. TreeFam: a curated database of phylogenetic trees of animal gene families[J]. NUCLEIC ACIDS RESEARCH,2006,34:D572-D580. |
| APA | Li, Heng.,Coghlan, Avril.,Ruan, Jue.,Coin, Lachlan James.,Heriche, Jean-Karim.,...&Durbin, Richard.(2006).TreeFam: a curated database of phylogenetic trees of animal gene families.NUCLEIC ACIDS RESEARCH,34,D572-D580. |
| MLA | Li, Heng,et al."TreeFam: a curated database of phylogenetic trees of animal gene families".NUCLEIC ACIDS RESEARCH 34(2006):D572-D580. |
入库方式： OAI收割
来源：计算技术研究所
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