Grid-based data access to nucleotide sequence database
文献类型：期刊论文
| 作者 | Wang, Frank Zhigang; Wu, Sining; Helian, Na; Xu, Zhiwei; Deng, Yuhui; Khare, Vineet; Liao, Chenhan; Thompson, Chris; Parker, Micliael |
| 刊名 | NEW GENERATION COMPUTING
 |
| 出版日期 | 2007 |
| 卷号 | 25期号:4页码:409-424 |
| 关键词 | nucleotide sequence database grid computing life science grid-based data access MySQL |
| ISSN号 | 0288-3635 |
| 英文摘要 | The International Nucleotide Sequence Database Collaboration (INSDC) exchanges sequence data on a daily basis across its three member organizations in the USA, UK and Japan. This paper studies how this sequence database in MySQL can best take advantage of the increased transfer bandwidth of a Grid-optimized data communication protocol. Within the context of the UK Government Project Grid-oriented Storage (GOS) and the EC Project EuroAsiaGrid, COS File System (GOS-FS) has been developed in our lab, which melds distributed file system technology with high performance data transfer techniques to meet the needs of WAN/Grid-based virtual organizations. A real-world test shows that the INSDC sequence database backing up operation, mysqldump, over the GOS-FS protocol beats those over the classic NFS protocol by 6 times over the link between Cambridge and Tokyo. Best of all, the multi-streamed GOS-FS protocol remains fully compatible with existing IP infrastructures. |
| WOS研究方向 | Computer Science |
| 语种 | 英语 |
| WOS记录号 | WOS:000249675300006 |
| 出版者 | SPRINGER |
| 源URL | [http://119.78.100.204/handle/2XEOYT63/10840]  |
| 专题 | 中国科学院计算技术研究所期刊论文_英文 |
| 通讯作者 | Wang, Frank Zhigang |
| 作者单位 | 1.Ctr Gird Comp, Cambridge Cranfield High Perform Comp Facility, Cranfield MK43 0AL, Beds, England 2.Chinese Acad Sci, Comp Technol Inst, Beijing 100864, Peoples R China 3.Cambridge Cranfield High Perform Comp Facility, Cranfield MK43 0AL, Beds, England 4.Univ Cambridge, Cambridge e Sci Ctr, Cavendish Lab, Cambridge CB3 OHE, England |
| 推荐引用方式 GB/T 7714 | Wang, Frank Zhigang,Wu, Sining,Helian, Na,et al. Grid-based data access to nucleotide sequence database[J]. NEW GENERATION COMPUTING,2007,25(4):409-424. |
| APA | Wang, Frank Zhigang.,Wu, Sining.,Helian, Na.,Xu, Zhiwei.,Deng, Yuhui.,...&Parker, Micliael.(2007).Grid-based data access to nucleotide sequence database.NEW GENERATION COMPUTING,25(4),409-424. |
| MLA | Wang, Frank Zhigang,et al."Grid-based data access to nucleotide sequence database".NEW GENERATION COMPUTING 25.4(2007):409-424. |
入库方式： OAI收割
来源：计算技术研究所
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