Testing four candidate barcoding markers in temperate woody bamboos (Poaceae: Bambusoideae)
文献类型：期刊论文
| 作者 | Cai, Zhao-Ming1,2,3; Zhang, Yu-Xiao1,2; Zhang, Li-Na1,2; Gao, Lian-Ming1 ; Li, De-Zhu1,2
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| 刊名 | JOURNAL OF SYSTEMATICS AND EVOLUTION
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| 出版日期 | 2012-11-01 |
| 卷号 | 50期号:6页码:527-539 |
| 关键词 | DNA barcoding internal transcribed spacer (ITS) matK rbcL temperate woody bamboos |
| ISSN号 | 1674-4918 |
| 通讯作者 | Gao, LM (reprint author), Chinese Acad Sci, Kunming Inst Bot, Key Lab Biodivers & Biogeog, Kunming 650201, Peoples R China.,gaolm@mail.kib.ac.cn ; dzl@mail.kib.ac.cn |
| 英文摘要 | Bambusoideae is an important subfamily of the grass family Poaceae that has considerable economic, ecologic and cultural value. In addition, Bambusoideae species are important constituents of the forest vegetation in China. Because of the paucity of flower-bearing specimens and homoplasies of morphological characters, it is difficult to identify species of Bambusoideae using morphology alone, especially in the case of temperate woody bamboos (i.e. Arundinarieae). To this end, DNA barcoding has shown great potential in identifying species. The present study is the first attempt to test the feasibility of four proposed DNA barcoding markers (matK, rbcL, trnH-psbA, and internal transcribed spacer [ITS]) in identifying 27 species of the temperate woody bamboos. Three plastid markers showed high levels of universality, whereas the universality of ITS was comparatively low. A single plastid marker provided low levels of discrimination success at both the genus and species levels (<12%). Among the combinations of plastid markers, the highest discriminatory power was obtained using the combination of rbcL + matK (14.8%). Using a combination of three markers did not increase species discrimination. The nuclear region ITS alone could identify 66.7% of species, although fewer taxa were included in the ITS analyses than in the plastid analyses. When ITS was integrated with a single or combination of plastid markers, the species discriminatory power was significantly improved. We suggest that a combination of rbcL + ITS, which exhibited the highest species identification power of all combinations in the present study, could be used as a potential DNA barcode for temperate woody bamboos. |
| 学科主题 | Plant Sciences |
| 类目[WOS] | Plant Sciences |
| 研究领域[WOS] | Plant Sciences |
| 关键词[WOS] | INTERNAL TRANSCRIBED SPACER ; LAND PLANTS ; DNA BARCODES ; FLOWERING PLANTS ; PHYLOGENETIC ANALYSIS ; MEDICINAL-PLANTS ; GRASSES POACEAE ; SEQUENCE DATA ; EVOLUTION ; IDENTIFICATION |
| 收录类别 | SCI |
| 资助信息 | Research Fund for the Large-Scale Scientific Facilities of the Chinese Academy of Sciences [2009-LSF-GBOWS-01]; National Natural Science Foundation of China [U1136603, 30990244]; talent project of the Yunnan Province of China [2008YP064]; program of innovation teams of Yunnan Province of China [392009CI011] |
| 语种 | 英语 |
| WOS记录号 | WOS:000310888700007 |
| 公开日期 | 2013-01-22 |
| 源URL | [http://ir.kib.ac.cn:8080/handle/151853/15966]  |
| 专题 | 昆明植物研究所_中国科学院东亚植物多样性与生物地理学重点实验室 |
| 作者单位 | 1.Chinese Acad Sci, Kunming Inst Bot, Key Lab Biodivers & Biogeog, Kunming 650201, Peoples R China 2.Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, Plant Gemplasm & Genom Ctr, Kunming 650201, Peoples R China 3.Chinese Acad Sci, Grad Univ, Beijing 100049, Peoples R China |
| 推荐引用方式 GB/T 7714 | Cai, Zhao-Ming,Zhang, Yu-Xiao,Zhang, Li-Na,et al. Testing four candidate barcoding markers in temperate woody bamboos (Poaceae: Bambusoideae)[J]. JOURNAL OF SYSTEMATICS AND EVOLUTION,2012,50(6):527-539. |
| APA | Cai, Zhao-Ming,Zhang, Yu-Xiao,Zhang, Li-Na,Gao, Lian-Ming,&Li, De-Zhu.(2012).Testing four candidate barcoding markers in temperate woody bamboos (Poaceae: Bambusoideae).JOURNAL OF SYSTEMATICS AND EVOLUTION,50(6),527-539. |
| MLA | Cai, Zhao-Ming,et al."Testing four candidate barcoding markers in temperate woody bamboos (Poaceae: Bambusoideae)".JOURNAL OF SYSTEMATICS AND EVOLUTION 50.6(2012):527-539. |
入库方式： OAI收割
来源：昆明植物研究所
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