Bayesian mixed models and divergence time estimation of Chinese cavefishes (Cyprinidae : Sinocyclocheilus)
文献类型：期刊论文
| 作者 | Li ZhiQiang1,2; Guo BaoCheng1,2; Li JunBing1,2; He ShunPing1; Chen Yiyu1 |
| 刊名 | CHINESE SCIENCE BULLETIN
 |
| 出版日期 | 2008-08-01 |
| 卷号 | 53期号:15页码:2342-2352 |
| 关键词 | Sinocyclocheilus phylogeny relaxed molecular clock |
| ISSN号 | 1001-6538 |
| 通讯作者 | He, SP, Chinese Acad Sci, Inst Hydrobiol, Wuhan 430072, Peoples R China |
| 中文摘要 | The genus Sinocyclocheilus is distributed in Yun-Gui Plateau and its surrounding region only, within more than 10 cave species showing different degrees of degeneration of eyes and pigmentation with wonderful adaptations. To present, published morphological and molecular phylogenetic hypotheses of Sinocyclocheilus from prior works are very different and the relationships within the genus are still far from clear. We obtained the sequences of cytochrome b (cyt b) and NADH dehydrogenase subunit 4 (ND4) of 34 species within Sinocyclocheilus, which represent the most dense taxon sampling to date. We performed Bayesian mixed models analyses with this data set. Under this phylogenetic framework, we estimated the divergence times of recovered clades using different methods under relaxed molecular clock. Our phyloegentic results supported the monophyly of Sinocyclocheilus and showed that this genus could be subdivided into 6 major clades. In addition, an earlier finding demonstrating the polyphyletic of cave species and the most basal position of S. jii was corroborated. Relaxed divergence-time estimation suggested that Sinocyclocheilus originated at the late Miocene, about 11 million years ago (Ma), which is older than what have been assumed. |
| 英文摘要 | The genus Sinocyclocheilus is distributed in Yun-Gui Plateau and its surrounding region only, within more than 10 cave species showing different degrees of degeneration of eyes and pigmentation with wonderful adaptations. To present, published morphological and molecular phylogenetic hypotheses of Sinocyclocheilus from prior works are very different and the relationships within the genus are still far from clear. We obtained the sequences of cytochrome b (cyt b) and NADH dehydrogenase subunit 4 (ND4) of 34 species within Sinocyclocheilus, which represent the most dense taxon sampling to date. We performed Bayesian mixed models analyses with this data set. Under this phylogenetic framework, we estimated the divergence times of recovered clades using different methods under relaxed molecular clock. Our phyloegentic results supported the monophyly of Sinocyclocheilus and showed that this genus could be subdivided into 6 major clades. In addition, an earlier finding demonstrating the polyphyletic of cave species and the most basal position of S. jii was corroborated. Relaxed divergence-time estimation suggested that Sinocyclocheilus originated at the late Miocene, about 11 million years ago (Ma), which is older than what have been assumed. |
| WOS标题词 | Science & Technology |
| 学科主题 | Multidisciplinary Sciences |
| 类目[WOS] | Multidisciplinary Sciences |
| 研究领域[WOS] | Science & Technology - Other Topics |
| 关键词[WOS] | PHYLOGENETIC-RELATIONSHIPS ; MOLECULAR EVOLUTION ; SEQUENCE ALIGNMENT ; BLIND CAVEFISH ; ABSOLUTE RATES ; LIKELIHOOD ; CYPRINIFORMES ; TELEOSTEI ; INFERENCE ; LIZARDS |
| 收录类别 | SCI |
| 语种 | 英语 |
| WOS记录号 | WOS:000258384800009 |
| 公开日期 | 2010-10-13 |
| 源URL | [http://ir.ihb.ac.cn/handle/152342/8044]  |
| 专题 | 水生生物研究所_中科院水生所知识产出（2009年前）_期刊论文 |
| 作者单位 | 1.Chinese Acad Sci, Inst Hydrobiol, Wuhan 430072, Peoples R China 2.Chinese Acad Sci, Grad Univ, Beijing 100049, Peoples R China |
| 推荐引用方式 GB/T 7714 | Li ZhiQiang,Guo BaoCheng,Li JunBing,et al. Bayesian mixed models and divergence time estimation of Chinese cavefishes (Cyprinidae : Sinocyclocheilus)[J]. CHINESE SCIENCE BULLETIN,2008,53(15):2342-2352. |
| APA | Li ZhiQiang,Guo BaoCheng,Li JunBing,He ShunPing,&Chen Yiyu.(2008).Bayesian mixed models and divergence time estimation of Chinese cavefishes (Cyprinidae : Sinocyclocheilus).CHINESE SCIENCE BULLETIN,53(15),2342-2352. |
| MLA | Li ZhiQiang,et al."Bayesian mixed models and divergence time estimation of Chinese cavefishes (Cyprinidae : Sinocyclocheilus)".CHINESE SCIENCE BULLETIN 53.15(2008):2342-2352. |
入库方式： OAI收割
来源：水生生物研究所
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