Contradiction between Plastid Gene Transcription and Function Due to Complex Posttranscriptional Splicing: An Exemplary Study of ycf15 Function and Evolution in Angiosperms
文献类型：期刊论文
| 作者 | Shi, Chao1,2,3; Liu, Yuan2,3 ; Huang, Hui2; Xia, En-Hua2,3; Zhang, Hai-Bin2,3; Gao, Li-Zhi2
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| 刊名 | PLOS ONE
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| 出版日期 | 2013-03-18 |
| 卷号 | 8期号:3页码:e59620 |
| 关键词 | CHLOROPLAST GENOME SEQUENCE COMPLETE NUCLEOTIDE-SEQUENCE INDEPENDENT TRANSFERS HORIZONTAL TRANSFER MAXIMUM-LIKELIHOOD FLOWERING PLANTS RNA-METABOLISM NUCLEUS DNA ORGANIZATION |
| ISSN号 | 1932-6203 |
| 通讯作者 | Gao, LZ (reprint author), Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species Southwest China, Plant Germplasm & Genom Ctr, Kunming, Peoples R China. ; Lgao@mail.kib.ac.cn |
| 英文摘要 | Plant chloroplast genes are usually co-transcribed while its posttranscriptional splicing is fairly complex and remains largely unsolved. On basis of sequencing the three complete Camellia (Theaceae) chloroplast genomes for the first time, we comprehensively analyzed the evolutionary patterns of ycf15, a plastid gene quite paradoxical in terms of its function and evolution, along the inferred angiosperm phylogeny. Although many species in separate lineages including the three species reported here contained an intact ycf15 gene in their chloroplast genomes, the phylogenetic mixture of both intact and obviously disabled ycf15 genes imply that they are all non-functional. Both intracellular gene transfer (IGT) and horizontal gene transfer (HGT) failed to explain such distributional anomalies. While, transcriptome analyses revealed that ycf15 was transcribed as precursor polycistronic transcript which contained ycf2, ycf15 and antisense trnL-CAA. The transcriptome assembly was surprisingly found to cover near the complete Camellia chloroplast genome. Many non-coding regions including pseudogenes were mapped by multiple transcripts, indicating the generality of pseudogene transcriptions. Our results suggest that plastid DNA posttranscriptional splicing may involve complex cleavage of nonfunctional genes. |
| WOS标题词 | Science & Technology |
| 学科主题 | Science & Technology - Other Topics |
| 类目[WOS] | Multidisciplinary Sciences |
| 研究领域[WOS] | Science & Technology - Other Topics |
| 关键词[WOS] | CHLOROPLAST GENOME SEQUENCE ; COMPLETE NUCLEOTIDE-SEQUENCE ; INDEPENDENT TRANSFERS ; HORIZONTAL TRANSFER ; MAXIMUM-LIKELIHOOD ; FLOWERING PLANTS ; RNA-METABOLISM ; NUCLEUS ; DNA ; ORGANIZATION |
| 收录类别 | SCI |
| 资助信息 | Key Project of Natural Science Foundation of Yunnan Province [2010CC011]; Top Talents Program of Yunnan Province [20080A009]; Hundreds Oversea Talents Program of Yunnan Province, Hundreds Talents Program of Chinese Academy of Sciences; Chinese Academy of Science [KSCX2-YW-N-029]; Chinese Department of Science and Technology (973 Program) [2007CB815703]; startup grant of Kunming Institute of Botany, CAS |
| 语种 | 英语 |
| WOS记录号 | WOS:000316411600068 |
| 公开日期 | 2013-06-08 |
| 源URL | [http://ir.kib.ac.cn/handle/151853/16493]  |
| 专题 | 昆明植物研究所_中国西南野生生物种质资源库 |
| 作者单位 | 1.Chinese Acad Sci, Kunming Inst Bot, Key Lab Biodivers & Biogeog, Kunming, Peoples R China 2.Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species Southwest China, Plant Germplasm & Genom Ctr, Kunming, Peoples R China 3.Univ Chinese Acad Sci, Beijing, Peoples R China |
| 推荐引用方式 GB/T 7714 | Shi, Chao,Liu, Yuan,Huang, Hui,et al. Contradiction between Plastid Gene Transcription and Function Due to Complex Posttranscriptional Splicing: An Exemplary Study of ycf15 Function and Evolution in Angiosperms[J]. PLOS ONE,2013,8(3):e59620. |
| APA | Shi, Chao,Liu, Yuan,Huang, Hui,Xia, En-Hua,Zhang, Hai-Bin,&Gao, Li-Zhi.(2013).Contradiction between Plastid Gene Transcription and Function Due to Complex Posttranscriptional Splicing: An Exemplary Study of ycf15 Function and Evolution in Angiosperms.PLOS ONE,8(3),e59620. |
| MLA | Shi, Chao,et al."Contradiction between Plastid Gene Transcription and Function Due to Complex Posttranscriptional Splicing: An Exemplary Study of ycf15 Function and Evolution in Angiosperms".PLOS ONE 8.3(2013):e59620. |
入库方式： OAI收割
来源：昆明植物研究所
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