The monophyly of Chimonocalamus and conflicting gene trees in Arundinarieae (Poaceae: Bambusoideae) inferred from four plastid and two nuclear markers
文献类型：期刊论文
| 作者 | Yang, Hong-Mei1,2,3; Zhang, Yu-Xiao1,2; Yang, Jun-Bo2; Li, De-Zhu1,2
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| 刊名 | MOLECULAR PHYLOGENETICS AND EVOLUTION
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| 出版日期 | 2013-08-01 |
| 卷号 | 68期号:2页码:340-356 |
| 关键词 | Chimonocalamus Plastid DNA GBSSI LEAFY Phylogeny Incongruence |
| ISSN号 | 1055-7903 |
| 通讯作者 | Li, DZ (reprint author), Chinese Acad Sci, Kunming Inst Bot, Key Lab Biodivers & Biogeog, Kunming 650201, Yunnan, Peoples R China. ; dzl@mail.kib.ac.cn |
| 英文摘要 | Arundinarieae is not only a taxonomically difficult group of bamboos, but also a troublesome one in molecular phylogenetics. In this study, the phylogeny of 50 species in Arundinarieae with an emphasis on Chimonocalamus was reconstructed, using four plastid regions (rpl32-trnL, trnT-trnL, rps16-trnQ and trnC-rpoB) and two nuclear genes (GBSSI and LEAFY). The plastid phylogeny was largely consistent with the previous studies, except that Ampelocalamus calcareus was newly recovered as lineage Xl. The nuclear phylogeny of LEAFY had better resolution than the one of GBSSI. The close relationships among Ampelocalamus, Drepanostachyum and Himalayacalamus were retrieved by the nuclear datasets. Alpine Bashania, Chimonocalamus, Thamnocalamus, and species currently placed in Fargesia and Yushania formed a clade in the LEAFY and combined nuclear phylogenies. Some of the gene tree disparities revealed in previous studies were reconfirmed. Chimonocalamus was recovered as monophyletic by combining the nuclear genes, but as polyphyletic in plastid analyses. Insufficient informative characters, hybridization, plastid capture or incomplete plastid lineage sorting could be responsible for the incongruent phylogenetic positions of some species of Chimonocalamus. (C) 2013 Elsevier Inc. All rights reserved. |
| WOS标题词 | Science & Technology ; Life Sciences & Biomedicine |
| 学科主题 | Biochemistry & Molecular Biology; Evolutionary Biology; Genetics & Heredity |
| 类目[WOS] | Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity |
| 研究领域[WOS] | Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity |
| 关键词[WOS] | LENGTH DIFFERENCE TEST ; SCRUB MINTS LAMIACEAE ; DNA-SEQUENCES ; WOODY BAMBOOS ; PHYLOGENETIC INFERENCE ; 2ND INTRON ; GBSSI GENE ; CHLOROPLAST CAPTURE ; THAMNOCALAMUS GROUP ; ALLIES GRAMINEAE |
| 收录类别 | SCI |
| 资助信息 | National Natural Science Foundation of China [31100148, 31100165]; Project of Knowledge Innovation Program of the Chinese Academy of Sciences [KSCX2-EW-J-24]; NSFC-Yunnan Joint Project [U1136603] |
| 语种 | 英语 |
| WOS记录号 | WOS:000319639500018 |
| 公开日期 | 2013-07-24 |
| 源URL | [http://ir.kib.ac.cn/handle/151853/16645]  |
| 专题 | 昆明植物研究所_中国科学院东亚植物多样性与生物地理学重点实验室 |
| 作者单位 | 1.Chinese Acad Sci, Kunming Inst Bot, Key Lab Biodivers & Biogeog, Kunming 650201, Yunnan, Peoples R China 2.Germplasm Bank Wild Species, Plant Germplasm & Genom Ctr, Kunming 650201, Yunnan, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100049, Peoples R China |
| 推荐引用方式 GB/T 7714 | Yang, Hong-Mei,Zhang, Yu-Xiao,Yang, Jun-Bo,et al. The monophyly of Chimonocalamus and conflicting gene trees in Arundinarieae (Poaceae: Bambusoideae) inferred from four plastid and two nuclear markers[J]. MOLECULAR PHYLOGENETICS AND EVOLUTION,2013,68(2):340-356. |
| APA | Yang, Hong-Mei,Zhang, Yu-Xiao,Yang, Jun-Bo,&Li, De-Zhu.(2013).The monophyly of Chimonocalamus and conflicting gene trees in Arundinarieae (Poaceae: Bambusoideae) inferred from four plastid and two nuclear markers.MOLECULAR PHYLOGENETICS AND EVOLUTION,68(2),340-356. |
| MLA | Yang, Hong-Mei,et al."The monophyly of Chimonocalamus and conflicting gene trees in Arundinarieae (Poaceae: Bambusoideae) inferred from four plastid and two nuclear markers".MOLECULAR PHYLOGENETICS AND EVOLUTION 68.2(2013):340-356. |
入库方式： OAI收割
来源：昆明植物研究所
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