Metagenomic Analysis of the Diversity of DNA Viruses in the Surface and Deep Sea of the South China Sea
文献类型：期刊论文
| 作者 | Liang, Yantao1,2,3; Wang, Long1; Wang, Zengmeng1; Zhao, Jiulong1; Yang, Qingwei2; Wang, Min2; Yang, Kaiguang4; Zhang, Lihua4; Jiao, Nianzhi3; Zhang, Yongyu1 |
| 刊名 | FRONTIERS IN MICROBIOLOGY
 |
| 出版日期 | 2019-08-23 |
| 卷号 | 10页码:14 |
| 关键词 | marine viruses South China Sea metagenomics community structure deep sea |
| ISSN号 | 1664-302X |
| DOI | 10.3389/fmicb.2019.01951 |
| 通讯作者 | Zhang, Yongyu(zhangyy@qibebt.ac.cn) |
| 英文摘要 | A metagenomic analysis of the viral community from five surface and five deep sea water (>2000 m below the surface, mbs) samples collected from the central basin of the South China Sea and adjacent Northwest Pacific Ocean during July-August 2017 was conducted herein. We builded up a South China Sea DNA virome (SCSV) dataset of 29,967 viral Operational Taxonomic Units (vOTUs), which is comparable to the viral populations from the original Tara Ocean and Malaspina expeditions. The most abundant and widespread viral populations were from the uncultivated viruses annotated from the viral metagenomics. Only 74 and 37 vOTUs have similarity with the reported genomes from the cultivated viruses and the single-virus genomics, respectively. The community structures of deep sea viromes in the SCSV were generally different from the surface viromes. The carbon flux and nutrients (PO4 and NOx) were related to the surface and deep sea viromes in the SCSV, respectively. In the SCSV, the annotated vOTUs could be affiliated to the cultivated viruses mainly including Pelagibacter (SAR11) phage HTVC010P, Prochlorococcus phages (P-GSP1, P-SSM4, and P-TIM68), Cyanophages (MED4-184 and MED4-117) and Mycobacterium phages (Sparky and Squirty). It indicated that phage infection to the SAR11 cluster may occur ubiquitously and has significant impacts on bathypelagic SAR11 communities in the deep sea. Meanwhile, as Prochlorococcus is prominently distributed in the euphotic ocean, the existence of their potential phages in the deep sea suggested the sedimentation mechanism might contribute to the formation of the deep sea viromes. Intriguingly, the presence of Mycobacterium phages only in the deep sea viromes, suggests inhabitance of endemic viral populations in the deep sea viromes in the SCSV. This study provided an insight of the viral community in the South China Sea and for the first time uncovered the deep sea viral diversity in the central basin of the South China Sea. |
| WOS关键词 | CARBON ; PACIFIC ; OCEAN ; PATTERNS ; SEQUENCE ; AMPLIFICATION ; DYNAMICS ; GENOME ; EXPORT ; BIAS |
| 资助项目 | Qingdao National Laboratory for Marine Science and Technology[QNLM2016ORP0311] ; National Key Research and Development Program of China[2016YFA0601402] ; NSFC[41876174] ; NSFC[41976117] ; NSFC[41606153] ; Senior User Project of RV KEXUE[KEXUE2019GZ03] ; Senior User Project of RV KEXUE[KEXUE2018G02] ; DICPQIBEBT[DICPQIBEBT UN201803] ; QIBEBT[QIBEBT ZZBS 201805] ; Dalian National Laboratory For Clean Energy (DNL), CAS ; Key R&D project in Shandong Province[2019GHY112079] ; MEL Visiting Fellowship Program[MELRS1511] ; Center for Ocean Mega-Science, Chinese Academy of Sciences |
| WOS研究方向 | Microbiology |
| 语种 | 英语 |
| WOS记录号 | WOS:000482413400001 |
| 出版者 | FRONTIERS MEDIA SA |
| 资助机构 | Qingdao National Laboratory for Marine Science and Technology ; Qingdao National Laboratory for Marine Science and Technology ; National Key Research and Development Program of China ; National Key Research and Development Program of China ; NSFC ; NSFC ; Senior User Project of RV KEXUE ; Senior User Project of RV KEXUE ; DICPQIBEBT ; DICPQIBEBT ; QIBEBT ; QIBEBT ; Dalian National Laboratory For Clean Energy (DNL), CAS ; Dalian National Laboratory For Clean Energy (DNL), CAS ; Key R&D project in Shandong Province ; Key R&D project in Shandong Province ; MEL Visiting Fellowship Program ; MEL Visiting Fellowship Program ; Center for Ocean Mega-Science, Chinese Academy of Sciences ; Center for Ocean Mega-Science, Chinese Academy of Sciences ; Qingdao National Laboratory for Marine Science and Technology ; Qingdao National Laboratory for Marine Science and Technology ; National Key Research and Development Program of China ; National Key Research and Development Program of China ; NSFC ; NSFC ; Senior User Project of RV KEXUE ; Senior User Project of RV KEXUE ; DICPQIBEBT ; DICPQIBEBT ; QIBEBT ; QIBEBT ; Dalian National Laboratory For Clean Energy (DNL), CAS ; Dalian National Laboratory For Clean Energy (DNL), CAS ; Key R&D project in Shandong Province ; Key R&D project in Shandong Province ; MEL Visiting Fellowship Program ; MEL Visiting Fellowship Program ; Center for Ocean Mega-Science, Chinese Academy of Sciences ; Center for Ocean Mega-Science, Chinese Academy of Sciences ; Qingdao National Laboratory for Marine Science and Technology ; Qingdao National Laboratory for Marine Science and Technology ; National Key Research and Development Program of China ; National Key Research and Development Program of China ; NSFC ; NSFC ; Senior User Project of RV KEXUE ; Senior User Project of RV KEXUE ; DICPQIBEBT ; DICPQIBEBT ; QIBEBT ; QIBEBT ; Dalian National Laboratory For Clean Energy (DNL), CAS ; Dalian National Laboratory For Clean Energy (DNL), CAS ; Key R&D project in Shandong Province ; Key R&D project in Shandong Province ; MEL Visiting Fellowship Program ; MEL Visiting Fellowship Program ; Center for Ocean Mega-Science, Chinese Academy of Sciences ; Center for Ocean Mega-Science, Chinese Academy of Sciences ; Qingdao National Laboratory for Marine Science and Technology ; Qingdao National Laboratory for Marine Science and Technology ; National Key Research and Development Program of China ; National Key Research and Development Program of China ; NSFC ; NSFC ; Senior User Project of RV KEXUE ; Senior User Project of RV KEXUE ; DICPQIBEBT ; DICPQIBEBT ; QIBEBT ; QIBEBT ; Dalian National Laboratory For Clean Energy (DNL), CAS ; Dalian National Laboratory For Clean Energy (DNL), CAS ; Key R&D project in Shandong Province ; Key R&D project in Shandong Province ; MEL Visiting Fellowship Program ; MEL Visiting Fellowship Program ; Center for Ocean Mega-Science, Chinese Academy of Sciences ; Center for Ocean Mega-Science, Chinese Academy of Sciences |
| 源URL | [http://cas-ir.dicp.ac.cn/handle/321008/173186]  |
| 专题 | 大连化学物理研究所_中国科学院大连化学物理研究所 |
| 通讯作者 | Zhang, Yongyu |
| 作者单位 | 1.Chinese Acad Sci, Qingdao Inst Bioenergy & Bioproc Technol, Key Lab Biofuels, Shandong Prov Key Lab Energy Genet, Qingdao, Shandong, Peoples R China 2.Ocean Univ China, Coll Marine Life Sci, Inst Evolut & Manne Biodivers, Qingdao, Shandong, Peoples R China 3.Xiamen Univ, Inst Marine Microbes & Ecospheres, State Key Lab Marine Environm Sci, Xiamen, Fujian, Peoples R China 4.Chinese Acad Sci, Dalian Inst Chem Phys, Dalian, Peoples R China |
| 推荐引用方式 GB/T 7714 | Liang, Yantao,Wang, Long,Wang, Zengmeng,et al. Metagenomic Analysis of the Diversity of DNA Viruses in the Surface and Deep Sea of the South China Sea[J]. FRONTIERS IN MICROBIOLOGY,2019,10:14. |
| APA | Liang, Yantao.,Wang, Long.,Wang, Zengmeng.,Zhao, Jiulong.,Yang, Qingwei.,...&Zhang, Yongyu.(2019).Metagenomic Analysis of the Diversity of DNA Viruses in the Surface and Deep Sea of the South China Sea.FRONTIERS IN MICROBIOLOGY,10,14. |
| MLA | Liang, Yantao,et al."Metagenomic Analysis of the Diversity of DNA Viruses in the Surface and Deep Sea of the South China Sea".FRONTIERS IN MICROBIOLOGY 10(2019):14. |
入库方式： OAI收割
来源：大连化学物理研究所
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