Characteristic analysis of simple sequence repeats in the ridgetail white prawn Exopalaemon carinicauda genome and its application in parentage assignment
文献类型：期刊论文
| 作者 | Zhang, Qian2,3,4 ; Zhang, Chengsong3,4; Yu, Yang3,4; Wang, Quanchao3,4; Li, Fuhua1,3,4
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| 刊名 | JOURNAL OF THE WORLD AQUACULTURE SOCIETY
 |
| 出版日期 | 2019-09-09 |
| 页码 | 12 |
| 关键词 | Exopalaemon carinicauda genome-wide parentage assignment SSR |
| ISSN号 | 0893-8849 |
| DOI | 10.1111/jwas.12650 |
| 通讯作者 | Yu, Yang(yuyang@qdio.ac.cn) |
| 英文摘要 | The ridgetail white prawn, Exopalaemon carinicauda is one of the most valuable marine resources in China, but few studies have been conducted to describe the characteristics of the simple sequence repeats (SSRs) for this species. The present study provides a genome-wide view to SSRs in E. carinicauda. A total of 3,243,071 SSRs were detected in the whole genome sequences, while the mononucleotide SSR was the most abundant type. Adenine and Thymine (AT)-rich SSRs were more abundant than guanine and cytosine (GC)-rich SSRs. These SSR resources will be very useful for genetic studies such as parentage assignment, genetic diversity evaluation, and marker-assisted selection. Sustainable development of E. carinicauda aquaculture requires improved breeding stocks and systematically family-based selective breeding that relies on accurate pedigree information for estimating genetic merits. Therefore, eight highly polymorphic SSRs were selected for parentage assignment analysis. A total of 180 individuals from the offspring of four full-sib and two half-sib families were used to examine the efficacy of parentage analysis of those SSRs. The results showed that 98% of the offspring were unambiguously assigned to their female parent. The high efficacy of parentage assignment showed that the developed polymorphic SSR markers could be used for selective breeding in E. carinicauda. |
| 资助项目 | National Natural Science Foundation of China[31872552] ; Major project of Agriculture New Variety of Jiangsu Province, China[PZCZ201747] ; Blue Life Breakthrough Program of LMBB of Qingdao National Laboratory for Marine Science and Technology[MS2017N004] |
| WOS研究方向 | Fisheries |
| 语种 | 英语 |
| WOS记录号 | WOS:000485615700001 |
| 出版者 | WILEY |
| 源URL | [http://ir.qdio.ac.cn/handle/337002/162834]  |
| 专题 | 海洋研究所_实验海洋生物学重点实验室 |
| 通讯作者 | Yu, Yang |
| 作者单位 | 1.Chinese Acad Sci, Tenter Ocean Megasci, Qingdao, Shandong, Peoples R China 2.Univ Chinese Acad Sci, Beijing, Peoples R China 3.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao, Shandong, Peoples R China 4.Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao 266071, Shandong, Peoples R China |
| 推荐引用方式 GB/T 7714 | Zhang, Qian,Zhang, Chengsong,Yu, Yang,et al. Characteristic analysis of simple sequence repeats in the ridgetail white prawn Exopalaemon carinicauda genome and its application in parentage assignment[J]. JOURNAL OF THE WORLD AQUACULTURE SOCIETY,2019:12. |
| APA | Zhang, Qian,Zhang, Chengsong,Yu, Yang,Wang, Quanchao,&Li, Fuhua.(2019).Characteristic analysis of simple sequence repeats in the ridgetail white prawn Exopalaemon carinicauda genome and its application in parentage assignment.JOURNAL OF THE WORLD AQUACULTURE SOCIETY,12. |
| MLA | Zhang, Qian,et al."Characteristic analysis of simple sequence repeats in the ridgetail white prawn Exopalaemon carinicauda genome and its application in parentage assignment".JOURNAL OF THE WORLD AQUACULTURE SOCIETY (2019):12. |
入库方式： OAI收割
来源：海洋研究所
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