中国科学院机构知识库网格
Chinese Academy of Sciences Institutional Repositories Grid
ACP-DL: A Deep Learning Long Short-Term Memory Model to Predict Anticancer Peptides Using High-Efficiency Feature Representation

文献类型:期刊论文

作者Yi, HC (Yi, Hai-Cheng)[ 1,2 ]; You, ZH (You, Zhu-Hong)[ 1 ]; Zhou, X (Zhou, Xi)[ 1 ]; Cheng, L (Cheng, Li)[ 1 ]; Li, X (Li, Xiao)[ 1 ]; Jiang, TH (Jiang, Tong-Hai)[ 1 ]; Chen, ZH (Chen, Zhan-Heng)[ 1 ]
刊名MOLECULAR THERAPY-NUCLEIC ACIDS
出版日期2019
卷号17期号:9页码:1-9
ISSN号2162-2531
DOI10.1016/j.omtn.2019.04.025
英文摘要

Cancer is a well-known killer of human beings, which has led to countless deaths and misery. Anticancer peptides open a promising perspective for cancer treatment, and they have various attractive advantages. Conventional wet experiments are expensive and inefficient for finding and identifying novel anticancer peptides. There is an urgent need to develop a novel computational method to predict novel anticancer peptides. In this study, we propose a deep learning long short-term memory (LSTM) neural network model, ACP-DL, to effectively predict novel anticancer peptides. More specifically, to fully exploit peptide sequence information, we developed an efficient feature representation approach by integrating binary profile feature and k-mer sparse matrix of the reduced amino acid alphabet. Then we implemented a deep LSTM model to automatically learn how to identify anticancer peptides and non-anticancer peptides. To our knowledge, this is the first time that the deep LSTM model has been applied to predict anticancer peptides. It was demonstrated by cross-validation experiments that the proposed ACP-DL remarkably outperformed other comparison methods with high accuracy and satisfied specificity on benchmark datasets. In addition, we also contributed two new anticancer peptides benchmark datasets, ACP740 and ACP240, in this work.

WOS记录号WOS:000487984400001
源URL[http://ir.xjipc.cas.cn/handle/365002/7214]  
专题新疆理化技术研究所_多语种信息技术研究室
中国科学院新疆理化技术研究所
通讯作者You, ZH (You, Zhu-Hong)[ 1 ]
作者单位1.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
2.Chinese Acad Sci, Xinjiang Tech Inst Phys & Chem, Urumqi 830011, Peoples R China
推荐引用方式
GB/T 7714
Yi, HC ,You, ZH ,Zhou, X ,et al. ACP-DL: A Deep Learning Long Short-Term Memory Model to Predict Anticancer Peptides Using High-Efficiency Feature Representation[J]. MOLECULAR THERAPY-NUCLEIC ACIDS,2019,17(9):1-9.
APA Yi, HC .,You, ZH .,Zhou, X .,Cheng, L .,Li, X .,...&Chen, ZH .(2019).ACP-DL: A Deep Learning Long Short-Term Memory Model to Predict Anticancer Peptides Using High-Efficiency Feature Representation.MOLECULAR THERAPY-NUCLEIC ACIDS,17(9),1-9.
MLA Yi, HC ,et al."ACP-DL: A Deep Learning Long Short-Term Memory Model to Predict Anticancer Peptides Using High-Efficiency Feature Representation".MOLECULAR THERAPY-NUCLEIC ACIDS 17.9(2019):1-9.

入库方式: OAI收割

来源:新疆理化技术研究所

浏览0
下载0
收藏0
其他版本

除非特别说明,本系统中所有内容都受版权保护,并保留所有权利。