ACP-DL: A Deep Learning Long Short-Term Memory Model to Predict Anticancer Peptides Using High-Efficiency Feature Representation
文献类型:期刊论文
作者 | Yi, HC (Yi, Hai-Cheng)[ 1,2 ]; You, ZH (You, Zhu-Hong)[ 1 ]![]() ![]() ![]() |
刊名 | MOLECULAR THERAPY-NUCLEIC ACIDS
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出版日期 | 2019 |
卷号 | 17期号:9页码:1-9 |
ISSN号 | 2162-2531 |
DOI | 10.1016/j.omtn.2019.04.025 |
英文摘要 | Cancer is a well-known killer of human beings, which has led to countless deaths and misery. Anticancer peptides open a promising perspective for cancer treatment, and they have various attractive advantages. Conventional wet experiments are expensive and inefficient for finding and identifying novel anticancer peptides. There is an urgent need to develop a novel computational method to predict novel anticancer peptides. In this study, we propose a deep learning long short-term memory (LSTM) neural network model, ACP-DL, to effectively predict novel anticancer peptides. More specifically, to fully exploit peptide sequence information, we developed an efficient feature representation approach by integrating binary profile feature and k-mer sparse matrix of the reduced amino acid alphabet. Then we implemented a deep LSTM model to automatically learn how to identify anticancer peptides and non-anticancer peptides. To our knowledge, this is the first time that the deep LSTM model has been applied to predict anticancer peptides. It was demonstrated by cross-validation experiments that the proposed ACP-DL remarkably outperformed other comparison methods with high accuracy and satisfied specificity on benchmark datasets. In addition, we also contributed two new anticancer peptides benchmark datasets, ACP740 and ACP240, in this work. |
WOS记录号 | WOS:000487984400001 |
源URL | [http://ir.xjipc.cas.cn/handle/365002/7214] ![]() |
专题 | 新疆理化技术研究所_多语种信息技术研究室 中国科学院新疆理化技术研究所 |
通讯作者 | You, ZH (You, Zhu-Hong)[ 1 ] |
作者单位 | 1.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 2.Chinese Acad Sci, Xinjiang Tech Inst Phys & Chem, Urumqi 830011, Peoples R China |
推荐引用方式 GB/T 7714 | Yi, HC ,You, ZH ,Zhou, X ,et al. ACP-DL: A Deep Learning Long Short-Term Memory Model to Predict Anticancer Peptides Using High-Efficiency Feature Representation[J]. MOLECULAR THERAPY-NUCLEIC ACIDS,2019,17(9):1-9. |
APA | Yi, HC .,You, ZH .,Zhou, X .,Cheng, L .,Li, X .,...&Chen, ZH .(2019).ACP-DL: A Deep Learning Long Short-Term Memory Model to Predict Anticancer Peptides Using High-Efficiency Feature Representation.MOLECULAR THERAPY-NUCLEIC ACIDS,17(9),1-9. |
MLA | Yi, HC ,et al."ACP-DL: A Deep Learning Long Short-Term Memory Model to Predict Anticancer Peptides Using High-Efficiency Feature Representation".MOLECULAR THERAPY-NUCLEIC ACIDS 17.9(2019):1-9. |
入库方式: OAI收割
来源:新疆理化技术研究所
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