Comparative Genomics Reveals Accelerated Evolution of Fright Reaction Genes in Ostariophysan Fishes
文献类型:期刊论文
作者 | Yang, Liandong6; Jiang, Haifeng5,6; Chen, Juan5,6; Lei, Yi5,6; Sun, Ning5,6; Lv, Wenqi5,6; Near, Thomas J.3,4; He, Shunping1,2,6 |
刊名 | FRONTIERS IN GENETICS |
出版日期 | 2019-12-23 |
卷号 | 10期号:1页码:15 |
关键词 | ostariophysans fright reaction RNA-seq accelerated evolution positive selection |
DOI | 10.3389/fgene.2019.01283 |
英文摘要 | The ostariophysian fishes are the most species-rich clade in freshwaters. This diversification has been suggested to be associated with the fright reaction presented in most ostariophysians. However, the genetic forces that underlie fright reaction remains poorly understood. In the present study, through integrating behavioral, physiological, transcriptomic, and evolutionary genomic analyses, we found that the fright reaction has a broad impact on zebrafish at multiple levels, including changes in swimming behaviors, cortisol levels, and gene expression patterns. In total, 1,555 and 1,599 differentially expressed genes were identified in olfactory mucosae and brain of zebrafish, respectively, with a greater number upregulated after the fright reaction. Functional annotation showed that response to stress and signal transduction were strongly represented, which is directly associated with the fright reaction. These differentially expressed genes were shown to be evolved accelerated under the influence of positive selection, indicating that protein-coding evolution has played a major role in fright reaction. We found the basal vomeronasal type 2 receptors (v2r) gene, v2rl1, displayed significantly decrease expression after fright reaction, which suggests that v2rs may be important to detect the alarm substance and induce the fright reaction. Collectively, based on our transcriptome and evolutionary genomics analyses, we suggest that transcriptional plasticity of gene may play an important role in fright reaction in ostariophysian fishes. |
WOS关键词 | OLFACTORY RECEPTOR ; ADAPTIVE EVOLUTION ; BIASED GENES ; EXPRESSION PATTERN ; DIFFERENTIAL GENE ; CODON USAGE ; ZEBRAFISH ; STRESS ; DROSOPHILA ; RESPONSES |
资助项目 | National Natural Science Foundation of China[91731301] ; National Natural Science Foundation of China[31972866] ; National Natural Science Foundation of China[31601858] ; Institute of Hydrobiology, Chinese Academy of Sciences[Y55Z09] ; Institute of Hydrobiology, Chinese Academy of Sciences[Y85E03] ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China |
WOS研究方向 | Genetics & Heredity |
语种 | 英语 |
出版者 | FRONTIERS MEDIA SA |
WOS记录号 | WOS:000506010300001 |
资助机构 | National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Institute of Hydrobiology, Chinese Academy of Sciences ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China ; Wuhan Branch, Supercomputing Center, Chinese Academy of Sciences, China |
源URL | [http://ir.ihb.ac.cn/handle/342005/34955] |
专题 | 水生生物研究所_水生生物多样性与资源保护研究中心_期刊论文 |
通讯作者 | Near, Thomas J.; He, Shunping |
作者单位 | 1.Chinese Acad Sci, Ctr Excellence Anim Evolut & Genet, Kunming, Yunnan, Peoples R China 2.Chinese Acad Sci, Inst Deep Sea Sci & Engn, Sanya, Peoples R China 3.Yale Univ, Peabody Museum Nat Hist, New Haven, CT 06520 USA 4.Yale Univ, Dept Ecol & Evolutionary Biol, New Haven, CT 06520 USA 5.Univ Chinese Acad Sci, Beijing, Peoples R China 6.Chinese Acad Sci, Key Lab Aquat BiodiVers & Conservat, Inst Hydrobiol, Wuhan, Hubei, Peoples R China |
推荐引用方式 GB/T 7714 | Yang, Liandong,Jiang, Haifeng,Chen, Juan,et al. Comparative Genomics Reveals Accelerated Evolution of Fright Reaction Genes in Ostariophysan Fishes[J]. FRONTIERS IN GENETICS,2019,10(1):15. |
APA | Yang, Liandong.,Jiang, Haifeng.,Chen, Juan.,Lei, Yi.,Sun, Ning.,...&He, Shunping.(2019).Comparative Genomics Reveals Accelerated Evolution of Fright Reaction Genes in Ostariophysan Fishes.FRONTIERS IN GENETICS,10(1),15. |
MLA | Yang, Liandong,et al."Comparative Genomics Reveals Accelerated Evolution of Fright Reaction Genes in Ostariophysan Fishes".FRONTIERS IN GENETICS 10.1(2019):15. |
入库方式: OAI收割
来源:水生生物研究所
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