中国科学院机构知识库网格
Chinese Academy of Sciences Institutional Repositories Grid
Draft genomes of two Atlantic bay scallop subspecies Argopecten irradians irradians and A. i. concentricus

文献类型:期刊论文

作者Liu, Xiao; Li, Chao; Chen, Min; Liu, Bo; Yan, Xiaojun; Ning, Junhao; Ma, Bin; Liu, Guilong; Zhong, Zhaoshan; Jia, Yanglei
刊名SCIENTIFIC DATA
出版日期2020-03-23
卷号7期号:1页码:99
关键词PHYLOGENETIC ANALYSIS DATABASE CLASSIFICATION ADAPTATION SELECTION ALIGNMENT PROGRAM GENES TOOL
DOI10.1038/s41597-020-0441-7
产权排序[Liu, Xiao] Zhejiang Ocean Univ, Sch Fishery, Zhoushan 316022, Peoples R China ; [Li, Chao ; Liu, Bo ; Wang, Chunde] Qingdao Agr Univ, Marine Sci & Engn Coll, Qingdao 266109, Peoples R China ; [Chen, Min] Chinese Acad Sci, Yantai Inst Coastal Zone Res, Yantai 264003, Peoples R China ; [Chen, Min ; Ning, Junhao ; Wang, Chunde] Chinese Acad Sci, Ctr Ocean Mega Sci, Yantai 264003, Peoples R China ; [Ma, Bin ; Liu, Guilong] Yantai Spring Sea Aquaseeds Co Ltd, Yantai 264006, Peoples R China ; [Zhong, Zhaoshan] Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China ; [Shi, Qiong] BGI Acad Marine Sci, Guangdong Prov Key Lab Mol Breeding Marine Econ A, Shenzhen Key Lab Marine Gen, BGI Marine, Shenzhen 518083, Peoples R China
文献子类Article; Data Paper
英文摘要The two subspecies of Atlantic bay scallop (Argopecten irradians), A. i. irradians and A. i. concentricus, are economically important aquacultural species in northern and southern China. Here, we performed the whole-genome sequencing, assembly, and gene annotation and produced draft genomes for both subspecies. In total, 253.17 and 272.97 gigabases (Gb) of raw reads were generated from Illumina Hiseq and PacBio platforms for A. i. irradians and A. i. concentricus, respectively. Draft genomes of 835.7 Mb and 874.82 Mb were assembled for the two subspecies, accounting for 83.9% and 89.79% of the estimated sizes of their corresponding genomes, respectively. The contig N50 and scaffold N50 were 78.54 kb and 1.53 Mb for the A. i. irradians genome, and those for the A. i. concentricus genome were 63.73 kb and 1.25 Mb. Moreover, 26,777 and 25,979 protein-coding genes were predicted for A. i. irradians and A. i. concentricus, respectively. These valuable genome assemblies lay a solid foundation for future theoretical studies and provide guidance for practical scallop breeding. Measurement(s)DNA center dot genome center dot RNA center dot transcriptome center dot sequence_assembly center dot sequence feature annotationTechnology Type(s)DNA sequencing assay center dot RNA sequencing center dot sequence assembly process center dot sequence annotationSample Characteristic - OrganismArgopecten irradians Machine-accessible metadata file describing the reported data: 10.6084/m9.figshare.11961984
WOS关键词PHYLOGENETIC ANALYSIS ; DATABASE ; CLASSIFICATION ; ADAPTATION ; SELECTION ; ALIGNMENT ; PROGRAM ; GENES ; TOOL
语种英语
WOS记录号WOS:000522091500002
资助机构National Natural Science Foundation of ChinaNational Natural Science Foundation of China [31572618, 31972791, 41676152] ; Earmarked Fund for Agriculture Seed Improvement Project of Shandong Province [2017LZGC009] ; Earmarked Fund for Shandong Modern Agro-Industry Technology Research System [SDAIT-14]
源URL[http://ir.yic.ac.cn/handle/133337/25065]  
专题烟台海岸带研究所_中科院烟台海岸带研究所知识产出
中国科学院烟台海岸带研究所
作者单位1.Chinese Acad Sci, Yantai Inst Coastal Zone Res, Yantai 264003, Peoples R China;
2.Chinese Acad Sci, Ctr Ocean Mega Sci, Yantai 264003, Peoples R China;
3.Qingdao Agr Univ, Marine Sci & Engn Coll, Qingdao 266109, Peoples R China;
4.Yantai Spring Sea Aquaseeds Co Ltd, Yantai 264006, Peoples R China;
5.Chinese Acad Sci, Inst Oceanol, Key Lab Expt Marine Biol, Qingdao 266071, Peoples R China;
6.BGI Acad Marine Sci, Guangdong Prov Key Lab Mol Breeding Marine Econ A, Shenzhen Key Lab Marine Gen, BGI Marine, Shenzhen 518083, Peoples R China
7.Zhejiang Ocean Univ, Sch Fishery, Zhoushan 316022, Peoples R China;
推荐引用方式
GB/T 7714
Liu, Xiao,Li, Chao,Chen, Min,et al. Draft genomes of two Atlantic bay scallop subspecies Argopecten irradians irradians and A. i. concentricus[J]. SCIENTIFIC DATA,2020,7(1):99.
APA Liu, Xiao.,Li, Chao.,Chen, Min.,Liu, Bo.,Yan, Xiaojun.,...&Wang, Chunde.(2020).Draft genomes of two Atlantic bay scallop subspecies Argopecten irradians irradians and A. i. concentricus.SCIENTIFIC DATA,7(1),99.
MLA Liu, Xiao,et al."Draft genomes of two Atlantic bay scallop subspecies Argopecten irradians irradians and A. i. concentricus".SCIENTIFIC DATA 7.1(2020):99.

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来源:烟台海岸带研究所

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