中国科学院机构知识库网格
Chinese Academy of Sciences Institutional Repositories Grid
首页 机构 成果 学者
  
  1. CAS IR Grid
  2. 水生生物研究所
  3. 中科院水生所知识产出（2009年前）
  4. 藻类生物学及应用研究中心
  5. 期刊论文
Comprehensive transcriptome analyses of two Oocystis algae provide insights into the adaptation to Qinghai-Tibet Plateau

文献类型：期刊论文

作者Zhang, Zhen-Hua3; Chang, Xin3; Su, Dan-Yan3; Yao, Ru3; Liu, Xu-Dong1; Zhu, Huan2; Liu, Guo-Xiang2; Zhong, Bo-Jian3
刊名JOURNAL OF SYSTEMATICS AND EVOLUTION
出版日期2020-05-21
页码11
ISSN号1674-4918
关键词adaptation differential expression green algae positive selection Qinghai-Tibet Plateau transcriptome
DOI10.1111/jse.12589
通讯作者Zhong, Bo-Jian(bjzhong@gmail.com)
英文摘要The harsh environments and high biodiversity of the Qinghai-Tibet Plateau (QTP) provide an ideal natural laboratory for studies on adaptive evolution. Low temperature and intense UV-B radiation are the main abiotic stresses to plants at high altitudes. The rapid development of RNA sequencing has enabled us to investigate the molecular adaptations of plants that thrive in the QTP at the genomic level. Despite the ecological importance of Oocystis algae on the plateau, the genetic mechanisms of the adaptations of these algae to this high-altitude environment remain poorly understood. Here, we sequenced and assembled the transcriptomes of Oocystis marina and Oocystis sp. LXD-20, and undertook comparative transcriptomic and evolutionary analyses to reveal their adaptive strategies. Our results identified 348 positively selected genes in Oocystis algae, and functional analyses indicated that many of these positively selected genes were associated with adaptation to abiotic stresses, such as antioxidative response, DNA repair mechanisms, translation, and post-translational modifications. We also identified the cold-responsive and UV-B-responsive genes in O. marina and Oocystis sp. LXD-20, and revealed the transcriptional regulation strategies under stress conditions. Our analyses provided a wealth of sequence data to serve as reference transcriptomes for future studies, and shed light on the adaptive strategies of green algae that live in the QTP.
WOS关键词POSITIVE SELECTION ; ARABIDOPSIS ; GENOME ; PROTEIN ; IDENTIFICATION ; ANNOTATION ; SEQUENCE ; DATABASE ; EXPRESSION ; EVOLUTION
资助项目National Natural Science Foundation of China[31970229] ; National Natural Science Foundation of China[31570219] ; Jiangsu Province Key Project for Scientific Research[16KJA180002] ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD)
WOS研究方向Plant Sciences
语种英语
出版者WILEY
WOS记录号WOS:000534393700001
资助机构National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; National Natural Science Foundation of China ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Jiangsu Province Key Project for Scientific Research ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Young Elite Scientists Sponsorship Program of Jiangsu Province ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD) ; Priority Academic Program Development of Jiangsu Higher Education Institutions (PAPD)
源URL[http://ir.ihb.ac.cn/handle/342005/36531]  
专题水生生物研究所_藻类生物学及应用研究中心_期刊论文
通讯作者Zhong, Bo-Jian
作者单位1.Shanxi Univ, Sch Life Sci, Taiyuan 030006, Peoples R China
2.Chinese Acad Sci, Inst Hydrobiol, Wuhan 430072, Peoples R China
3.Nanjing Normal Univ, Coll Life Sci, Nanjing 210023, Peoples R China
推荐引用方式
GB/T 7714		 Zhang, Zhen-Hua,Chang, Xin,Su, Dan-Yan,et al. Comprehensive transcriptome analyses of two Oocystis algae provide insights into the adaptation to Qinghai-Tibet Plateau[J]. JOURNAL OF SYSTEMATICS AND EVOLUTION,2020:11.
APA Zhang, Zhen-Hua.,Chang, Xin.,Su, Dan-Yan.,Yao, Ru.,Liu, Xu-Dong.,...&Zhong, Bo-Jian.(2020).Comprehensive transcriptome analyses of two Oocystis algae provide insights into the adaptation to Qinghai-Tibet Plateau.JOURNAL OF SYSTEMATICS AND EVOLUTION,11.
MLA Zhang, Zhen-Hua,et al."Comprehensive transcriptome analyses of two Oocystis algae provide insights into the adaptation to Qinghai-Tibet Plateau".JOURNAL OF SYSTEMATICS AND EVOLUTION (2020):11.

入库方式： OAI收割

来源：水生生物研究所

浏览0
下载0
收藏0
其他版本

除非特别说明，本系统中所有内容都受版权保护，并保留所有权利。