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MonkeyCBP: A Toolbox for Connectivity-Based Parcellation of Monkey Brain

文献类型：期刊论文

作者He, Bin3,4,5; Yang, Zhengyi4; Fan, Lingzhong2,4; Gao, Bin4; Li, Hai4; Ye, Chuyang4; You, Bo5; Jiang, Tianzi1,2,3,4,6,7,8
刊名FRONTIERS IN NEUROINFORMATICS
出版日期2020-04-28
卷号14页码:15
关键词parcellation brain atlas neuroimaging pipeline diffusion tractography parallel computing
DOI10.3389/fninf.2020.00014
通讯作者You, Bo(youbo@hrbust.edu.cn) ; Jiang, Tianzi(jiangtz@nlpr.ia.ac.cn)
英文摘要Non-human primate models are widely used in studying the brain mechanism underlying brain development, cognitive functions, and psychiatric disorders. Neuroimaging techniques, such as magnetic resonance imaging, play an important role in the examinations of brain structure and functions. As an indispensable tool for brain imaging data analysis, brain atlases have been extensively investigated, and a variety of versions constructed. These atlases diverge in the criteria based on which they are plotted. The criteria range from cytoarchitectonic features, neurotransmitter receptor distributions, myelination fingerprints, and transcriptomic patterns to structural and functional connectomic profiles. Among them, brainnetome atlas is tightly related to brain connectome information and built by parcellating the brain on the basis of the anatomical connectivity profiles derived from structural neuroimaging data. The pipeline for building the brainnetome atlas has been published as a toolbox named ATPP (A Pipeline for Automatic Tractography-Based Brain Parcellation). In this paper, we present a variation of ATPP, which is dedicated to monkey brain parcellation, to address the significant differences in the process between the two species. The new toolbox, MonkeyCBP, has major alterations in three aspects: brain extraction, image registration, and validity indices. By parcellating two different brain regions (posterior cingulate cortex) and (frontal pole) of the rhesus monkey, we demonstrate the efficacy of these alterations. The toolbox has been made public (, ). It is expected that the toolbox can benefit the non-human primate neuroimaging community with high-throughput computation and low labor involvement.
WOS关键词TRACTOGRAPHY-BASED PARCELLATION ; MULTI-ATLAS SEGMENTATION ; FUNCTIONAL CONNECTIVITY ; PRINCIPAL COMPONENTS ; CORTEX ; IMAGES ; ALGORITHMS ; INTEGRITY ; SELECTION ; PATTERNS
资助项目National Natural Science Foundation of China[31620103905] ; National Natural Science Foundation of China[81671855] ; Strategic Priority Research Program of the Chinese Academy of Sciences[XDB02030300] ; Science Frontier Program of the Chinese Academy of Sciences[QYZDJ-SSW-SMC019] ; Beijing Brain Initiative of Beijing Municipal Science & Technology Commission[Z181100001518004] ; Beijing Municipal Science & Technology Commission[Z161100000216139]
WOS研究方向Mathematical & Computational Biology ; Neurosciences & Neurology
语种英语
出版者FRONTIERS MEDIA SA
WOS记录号WOS:000533397200001
资助机构National Natural Science Foundation of China ; Strategic Priority Research Program of the Chinese Academy of Sciences ; Science Frontier Program of the Chinese Academy of Sciences ; Beijing Brain Initiative of Beijing Municipal Science & Technology Commission ; Beijing Municipal Science & Technology Commission
源URL[http://ir.ia.ac.cn/handle/173211/39440]  
专题自动化研究所_脑网络组研究中心
通讯作者You, Bo; Jiang, Tianzi
作者单位1.Univ Elect Sci & Technol China, Sch Life Sci & Technol, Key Lab NeuroInformat, Minist Educ, Chengdu, Peoples R China
2.Univ Chinese Acad Sci, Beijing, Peoples R China
3.Chinese Acad Sci, Inst Automat, Natl Lab Pattern Recognit, Beijing, Peoples R China
4.Chinese Acad Sci, Brainnetome Ctr, Inst Automat, Beijing, Peoples R China
5.Harbin Univ Sci & Technol, Sch Mech & Power Engn, Harbin, Peoples R China
6.Chinese Inst Brain Res, Beijing, Peoples R China
7.Univ Queensland, Queensland Brain Inst, Brisbane, Qld, Australia
8.Chinese Acad Sci, CAS Ctr Excellence Brain Sci & Intelligence Techn, Inst Automat, Beijing, Peoples R China
推荐引用方式
GB/T 7714		 He, Bin,Yang, Zhengyi,Fan, Lingzhong,et al. MonkeyCBP: A Toolbox for Connectivity-Based Parcellation of Monkey Brain[J]. FRONTIERS IN NEUROINFORMATICS,2020,14:15.
APA He, Bin.,Yang, Zhengyi.,Fan, Lingzhong.,Gao, Bin.,Li, Hai.,...&Jiang, Tianzi.(2020).MonkeyCBP: A Toolbox for Connectivity-Based Parcellation of Monkey Brain.FRONTIERS IN NEUROINFORMATICS,14,15.
MLA He, Bin,et al."MonkeyCBP: A Toolbox for Connectivity-Based Parcellation of Monkey Brain".FRONTIERS IN NEUROINFORMATICS 14(2020):15.

入库方式： OAI收割

来源：自动化研究所

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