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  4. 期刊论文
The NanDeSyn database for Nannochloropsis systems and synthetic biology

文献类型：期刊论文

作者Gong, Yanhai16,17,18,19; Kang, Nam K.14,15; Kim, Young U.15; Wang, Zengbin16,17,18,19; Wei, Li16,17,18,19; Xin, Yi16,17,18,19; Shen, Chen16,17,18,19; Wang, Qintao16,17,18,19; You, Wuxin13,18,19; Lim, Jong-Min12
刊名PLANT JOURNAL
出版日期2020-11-27
页码10
ISSN号0960-7412
关键词genomic database functional genomics industrial oleaginous microalgae Nannochloropsis Tripal
DOI10.1111/tpj.15025
通讯作者Chang, Yong K.(ychang@kaist.ac.kr) ; Jeong, Won-Joong(wonjoong@kribb.re.kr) ; Jeong, Byeong-ryool(bjeong@unist.ac.kr) ; Xu, Jian(xujian@qibebt.ac.cn)
英文摘要Nannochloropsis species, unicellular industrial oleaginous microalgae, are model organisms for microalgal systems and synthetic biology. To facilitate community-based annotation and mining of the rapidly accumulating functional genomics resources, we have initiated an international consortium and present a comprehensive multi-omics resource database named Nannochloropsis Design and Synthesis (NanDeSyn; ). Via the Tripal toolkit, it features user-friendly interfaces hosting genomic resources with gene annotations and transcriptomic and proteomic data for six Nannochloropsis species, including two updated genomes of Nannochloropsis oceanica IMET1 and Nannochloropsis salina CCMP1776. Toolboxes for search, Blast, synteny view, enrichment analysis, metabolic pathway analysis, a genome browser, etc. are also included. In addition, functional validation of genes is indicated based on phenotypes of mutants and relevant bibliography. Furthermore, epigenomic resources are also incorporated, especially for sequencing of small RNAs including microRNAs and circular RNAs. Such comprehensive and integrated landscapes of Nannochloropsis genomics and epigenomics will promote and accelerate community efforts in systems and synthetic biology of these industrially important microalgae.
WOS关键词OLEAGINOUS MICROALGAE NANNOCHLOROPSIS ; RNA-SEQ DATA ; LIPID PRODUCTION ; EICOSAPENTAENOIC ACID ; TRANSCRIPTION FACTOR ; NITROGEN-DEPLETION ; OCEANICA CCMP1779 ; EXPRESSION ; MECHANISMS ; BIOMASS
资助项目Natural Science Foundation of China[31900071] ; Ministry of Science and Technology of China[2018YFA0902502] ; Natural Science Foundation of Shandong Province[ZR2019QC012] ; Advanced Biomass R&D Center (ABC) of the Global Frontier Project - Ministry of Science and ICT, Republic of Korea[ABC-2011-0031350] ; Advanced Biomass R&D Center (ABC) of the Global Frontier Project - Ministry of Science and ICT, Republic of Korea[ABC-2011-0031343] ; Advanced Biomass R&D Center (ABC) of the Global Frontier Project - Ministry of Science and ICT, Republic of Korea[ABC-2010-0029728]
WOS研究方向Plant Sciences
语种英语
出版者WILEY
WOS记录号WOS:000592489500001
资助机构Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Ministry of Science and Technology of China ; Ministry of Science and Technology of China ; Ministry of Science and Technology of China ; Ministry of Science and Technology of China ; Natural Science Foundation of Shandong Province ; Natural Science Foundation of Shandong Province ; Natural Science Foundation of Shandong Province ; Natural Science Foundation of Shandong Province ; Advanced Biomass R&D Center (ABC) of the Global Frontier Project - Ministry of Science and ICT, Republic of Korea ; Advanced Biomass R&D Center (ABC) of the Global Frontier Project - Ministry of Science and ICT, Republic of Korea ; Advanced Biomass R&D Center (ABC) of the Global Frontier Project - Ministry of Science and ICT, Republic of Korea ; Advanced Biomass R&D Center (ABC) of the Global Frontier Project - Ministry of Science and ICT, Republic of Korea ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Ministry of Science and Technology of China ; Ministry of Science and Technology of China ; Ministry of Science and Technology of China ; Ministry of Science and Technology of China ; Natural Science Foundation of Shandong Province ; Natural Science Foundation of Shandong Province ; Natural Science Foundation of Shandong Province ; Natural Science Foundation of Shandong Province ; Advanced Biomass R&D Center (ABC) of the Global Frontier Project - Ministry of Science and ICT, Republic of Korea ; Advanced Biomass R&D Center (ABC) of the Global Frontier Project - Ministry of Science and ICT, Republic of Korea ; Advanced Biomass R&D Center (ABC) of the Global Frontier Project - Ministry of Science and ICT, Republic of Korea ; Advanced Biomass R&D Center (ABC) of the Global Frontier Project - Ministry of Science and ICT, Republic of Korea ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Ministry of Science and Technology of China ; Ministry of Science and Technology of China ; Ministry of Science and Technology of China ; Ministry of Science and Technology of China ; Natural Science Foundation of Shandong Province ; Natural Science Foundation of Shandong Province ; Natural Science Foundation of Shandong Province ; Natural Science Foundation of Shandong Province ; Advanced Biomass R&D Center (ABC) of the Global Frontier Project - Ministry of Science and ICT, Republic of Korea ; Advanced Biomass R&D Center (ABC) of the Global Frontier Project - Ministry of Science and ICT, Republic of Korea ; Advanced Biomass R&D Center (ABC) of the Global Frontier Project - Ministry of Science and ICT, Republic of Korea ; Advanced Biomass R&D Center (ABC) of the Global Frontier Project - Ministry of Science and ICT, Republic of Korea ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Natural Science Foundation of China ; Ministry of Science and Technology of China ; Ministry of Science and Technology of China ; Ministry of Science and Technology of China ; Ministry of Science and Technology of China ; Natural Science Foundation of Shandong Province ; Natural Science Foundation of Shandong Province ; Natural Science Foundation of Shandong Province ; Natural Science Foundation of Shandong Province ; Advanced Biomass R&D Center (ABC) of the Global Frontier Project - Ministry of Science and ICT, Republic of Korea ; Advanced Biomass R&D Center (ABC) of the Global Frontier Project - Ministry of Science and ICT, Republic of Korea ; Advanced Biomass R&D Center (ABC) of the Global Frontier Project - Ministry of Science and ICT, Republic of Korea ; Advanced Biomass R&D Center (ABC) of the Global Frontier Project - Ministry of Science and ICT, Republic of Korea
源URL[http://ir.ihb.ac.cn/handle/342005/39404]  
专题水生生物研究所_藻类生物技术和生物能源研发中心_期刊论文
通讯作者Chang, Yong K.; Jeong, Won-Joong; Jeong, Byeong-ryool; Xu, Jian
作者单位1.Ulsan Natl Inst Sci & Technol UNIST, Sch Energy & Chem Engn, Ulsan 44919, South Korea
2.Michigan State Univ, Dept Plant Biol, E Lansing, MI 48824 USA
3.Chinese Acad Sci, Inst Hydrobiol, Ctr Microalgal Biotechnol & Biofuels, Wuhan 430072, Peoples R China
4.Univ Maryland Baltimore Cty, Univ Maryland, Ctr Environm Sci, Inst Marine & Environm Technol, Baltimore, MD 21202 USA
5.Aix Marseille Univ, Inst Biosci & Biotechnol Aix Marseille, CEA Cadarache, CEA,CNRS, F-13108 St Paul Les Durance, France
6.Ocean Univ China, Inst Evolut & Marine Biodivers, Qingdao 266003, Shandong, Peoples R China
7.Ocean Univ China, Coll Marine Life Sci, Qingdao 266003, Shandong, Peoples R China
8.Michigan State Univ, MSU DOE Plant Res Lab, E Lansing, MI 48824 USA
9.Ocean Univ China, Coll Fisheries, Lab Appl Microalgae, Qingdao 266003, Peoples R China
10.Korea Res Inst Biosci & Biotechnol, Cell Factory Res Ctr, Daejeon 34141, South Korea
推荐引用方式
GB/T 7714		 Gong, Yanhai,Kang, Nam K.,Kim, Young U.,et al. The NanDeSyn database for Nannochloropsis systems and synthetic biology[J]. PLANT JOURNAL,2020:10.
APA Gong, Yanhai.,Kang, Nam K..,Kim, Young U..,Wang, Zengbin.,Wei, Li.,...&Xu, Jian.(2020).The NanDeSyn database for Nannochloropsis systems and synthetic biology.PLANT JOURNAL,10.
MLA Gong, Yanhai,et al."The NanDeSyn database for Nannochloropsis systems and synthetic biology".PLANT JOURNAL (2020):10.

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来源：水生生物研究所

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