GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes
文献类型：期刊论文
| 作者 | Jin, Jian-Jun; Yu, Wen-Bin ; Yang, Jun-Bo; Song, Yu5,5,5; dePamphilis, Claude W.; Yi, Ting-Shuang; Li, De-Zhu
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| 刊名 | GENOME BIOLOGY
 |
| 出版日期 | 2020 |
| 卷号 | 21期号:1页码:- |
| 关键词 | PLASTID GENOME PLANT MITOCHONDRIAL HORIZONTAL TRANSFER CHLOROPLAST GENOME DNA EVOLUTION GENE DIVERSIFICATION DYNAMICS REVEAL |
| ISSN号 | 1474-760X |
| DOI | 10.1186/s13059-020-02154-5 |
| 英文摘要 | GetOrganelle is a state-of-the-art toolkit to accurately assemble organelle genomes from whole genome sequencing data. It recruits organelle-associated reads using a modified "baiting and iterative mapping" approach, conducts de novo assembly, filters and disentangles the assembly graph, and produces all possible configurations of circular organelle genomes. For 50 published plant datasets, we are able to reassemble the circular plastomes from 47 datasets using GetOrganelle. GetOrganelle assemblies are more accurate than published and/or NOVOPlasty-reassembled plastomes as assessed by mapping. We also assemble complete mitochondrial genomes using GetOrganelle. GetOrganelle is freely released under a GPL-3 license (https://github.com/Kinggerm/GetOrganelle). |
| 学科主题 | Biotechnology & Applied Microbiology ; Genetics & Heredity |
| 语种 | 英语 |
| WOS记录号 | WOS:000572293100001 |
| 源URL | [http://ir.xtbg.org.cn/handle/353005/11809]  |
| 专题 | 西双版纳热带植物园_2012年后新成立研究组 |
| 作者单位 | 1.[dePamphilis, Claude W.] Penn State Univ, Dept Biol, University Pk, PA 16801 USA 2.Chinese Acad Sci, Southeast Asia Biodivers Res Inst, Yezin 05282, Nay Pyi Taw, Myanmar 3.Chinese Acad Sci, Core Bot Gardens, Ctr Conservat Biol, Mengla 666303, Yunnan, Peoples R China 4.Chinese Acad Sci, Ctr Integrat Conservat, Xishuangbanna Trop Bot Garden, Mengla 666303, Yunnan, Peoples R China 5.[Yu, Wen-Bin 6.Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, Kunming 650201, Yunnan, Peoples R China 7.Yi, Ting-Shuang 8.Yang, Jun-Bo 9.[Jin, Jian-Jun |
| 推荐引用方式 GB/T 7714 | Jin, Jian-Jun,Yu, Wen-Bin,Yang, Jun-Bo,et al. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes[J]. GENOME BIOLOGY,2020,21(1):-. |
| APA | Jin, Jian-Jun.,Yu, Wen-Bin.,Yang, Jun-Bo.,Song, Yu.,dePamphilis, Claude W..,...&Li, De-Zhu.(2020).GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes.GENOME BIOLOGY,21(1),-. |
| MLA | Jin, Jian-Jun,et al."GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes".GENOME BIOLOGY 21.1(2020):-. |
入库方式： OAI收割
来源：西双版纳热带植物园
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