The complete plastome of real yellow wood (Podocarpus latifolius): gene organization and comparison with related species
文献类型：期刊论文
| 作者 | Saina, Josphat K.1,2,3; Li, Zhi-Zhong1,2; Gichira, Andrew W.1,2,3; Avoga, Sheila1,2,3; Wang, Qing-Feng2,3; Kuo, Liao2,3 |
| 刊名 | HOLZFORSCHUNG
 |
| 出版日期 | 2019-06-01 |
| 卷号 | 73期号:6页码:525-536 |
| 关键词 | codon usage comparative analysis plastome plastome rearrangement Podocarpaceae Podocarpus latifolius RNA editing simple sequence repeats (SSRs) |
| ISSN号 | 0018-3830 |
| DOI | 10.1515/hf-2018-0155 |
| 英文摘要 | Podocarpus latifolius [(Thunb.) R.Br. ex Mirb.], also known as real yellow wood, is a large evergreen tree with exceptionally high-quality wood. It is a member of the Podocarpaceac family, which includes many species widely grown for wood pulp as well as timber for construction. Despite its importance, studies focusing on its genetic characterization and molecular biology are limited. Therefore, this study reports the complete plastome of P. latifolius, which is a circular molecule of 134 020 base pairs (bp) in length, lacking a quadripartite structure. The P. latifolius plastome encodes 117 unique genes, consisting of 82 protein-coding genes, 31 transfer RNA genes and four ribosomal RNA genes. The analysis showed that the Podocarpaceae plastomes have experienced some intron and gene losses, inversions, and inverted repeat (IR) loss resulting in a diverse plastome organization at the species and genus levels. Therefore, to understand the extent of these genomic rearrangements, more sampling of the Podocarpaceae plastomes is necessary. A total of 149 editing sites were predicted in 28 genes, all of which were C to U conversions. Moreover, a total of 164 simple sequence repeats (SSRs) were identified in the P. latifolius plastome, the majority being mononucleotide repeat motifs with A/T sequence predominance. Overall, the data obtained in this study will be useful for population genetics, evolutionary history and phylogenetic studies of the species in this genus. |
| 资助项目 | Special Funds for the Young Scholars of Taxonomy of Chinese Academy of Sciences[ZSBR-013] ; Sino-Africa Joint Research Center[Y323771W07] ; Sino-Africa Joint Research Center[SAJC201322] |
| WOS研究方向 | Forestry ; Materials Science |
| 语种 | 英语 |
| WOS记录号 | WOS:000469357200002 |
| 出版者 | WALTER DE GRUYTER GMBH |
| 源URL | [http://202.127.146.157/handle/2RYDP1HH/7936]  |
| 专题 | 中国科学院武汉植物园 |
| 通讯作者 | Wang, Qing-Feng; Kuo, Liao |
| 作者单位 | 1.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 2.Chinese Acad Sci, Key Lab Aquat Bot & Watershed Ecol, Wuhan Bot Garden, Wuhan 430074, Hubei, Peoples R China 3.Chinese Acad Sci, Sino African Joint Res Ctr, Wuhan 430074, Hubei, Peoples R China |
| 推荐引用方式 GB/T 7714 | Saina, Josphat K.,Li, Zhi-Zhong,Gichira, Andrew W.,et al. The complete plastome of real yellow wood (Podocarpus latifolius): gene organization and comparison with related species[J]. HOLZFORSCHUNG,2019,73(6):525-536. |
| APA | Saina, Josphat K.,Li, Zhi-Zhong,Gichira, Andrew W.,Avoga, Sheila,Wang, Qing-Feng,&Kuo, Liao.(2019).The complete plastome of real yellow wood (Podocarpus latifolius): gene organization and comparison with related species.HOLZFORSCHUNG,73(6),525-536. |
| MLA | Saina, Josphat K.,et al."The complete plastome of real yellow wood (Podocarpus latifolius): gene organization and comparison with related species".HOLZFORSCHUNG 73.6(2019):525-536. |
入库方式： OAI收割
来源：武汉植物园
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