Genome-Wide DNA Methylation Profiling in the Lotus (Nelumbo nucifera) Flower Showing its Contribution to the Stamen Petaloid
文献类型：期刊论文
| 作者 | Lin, Zhongyuan2,3; Liu, Meihui2,3; Damaris, Rebecca Njeri2,3; Nyong'a, Tonny Maraga2,3; Cao, Dingding2,3; Ou, Kefang1; Yang, Pingfang4 |
| 刊名 | PLANTS-BASEL
 |
| 出版日期 | 2019-05-01 |
| 卷号 | 8期号:5页码:15 |
| 关键词 | DNA methylation Nelumbo nucifera whole genome bisulfite sequencing gene expression |
| ISSN号 | 2223-7747 |
| DOI | 10.3390/plants8050135 |
| 英文摘要 | DNA methylation is a vital epigenetic modification. Methylation has a significant effect on the gene expression influencing the regulation of different physiological processes. Current studies on DNA methylation have been conducted on model plants. Lotus (Nelumbo nucifera) is a basic eudicot exhibiting variations during development, especially in flower formation. DNA methylation profiling was conducted on different flower tissues of lotuses through whole genome bisulfite sequencing (WGBS) to investigate the effects of DNA methylation on its stamen petaloid. A map of methylated cytosines at the single base pair resolution for the lotus was constructed. When the stamen was compared with the stamen petaloid, the DNA methylation exhibited a global decrease. Genome-wide relationship analysis between DNA methylation and gene expression identified 31 different methylation region (DMR)-associated genes, which might play crucial roles in floral organ formation, especially in the stamen petaloid. One out of 31 DMR-associated genes, NNU_05638 was homolog with Plant U-box 33 (PUB33). The DNA methylation status of NNU_05638 promoter was distinct in three floral organs, which was confirmed by traditional bisulfite sequencing. These results provide further insights about the regulation of stamen petaloids at the epigenetic level in lotus. |
| WOS研究方向 | Plant Sciences |
| 语种 | 英语 |
| WOS记录号 | WOS:000470960600026 |
| 出版者 | MDPI |
| 源URL | [http://202.127.146.157/handle/2RYDP1HH/7979]  |
| 专题 | 中国科学院武汉植物园 |
| 通讯作者 | Yang, Pingfang |
| 作者单位 | 1.Wuhan Inst Landscape Architecture, Wuhan 430081, Hubei, Peoples R China 2.Chinese Acad Sci, Key Lab Plant Germplasm Enhancement & Specialty A, Wuhan Bot Garden, Wuhan 430074, Hubei, Peoples R China 3.Univ Chinese Acad Sci, Beijing 100039, Peoples R China 4.Hubei Univ, Sch Life Sci, State Key Lab Biocatalysis & Enzyme Engn, Wuhan 430062, Hubei, Peoples R China |
| 推荐引用方式 GB/T 7714 | Lin, Zhongyuan,Liu, Meihui,Damaris, Rebecca Njeri,et al. Genome-Wide DNA Methylation Profiling in the Lotus (Nelumbo nucifera) Flower Showing its Contribution to the Stamen Petaloid[J]. PLANTS-BASEL,2019,8(5):15. |
| APA | Lin, Zhongyuan.,Liu, Meihui.,Damaris, Rebecca Njeri.,Nyong'a, Tonny Maraga.,Cao, Dingding.,...&Yang, Pingfang.(2019).Genome-Wide DNA Methylation Profiling in the Lotus (Nelumbo nucifera) Flower Showing its Contribution to the Stamen Petaloid.PLANTS-BASEL,8(5),15. |
| MLA | Lin, Zhongyuan,et al."Genome-Wide DNA Methylation Profiling in the Lotus (Nelumbo nucifera) Flower Showing its Contribution to the Stamen Petaloid".PLANTS-BASEL 8.5(2019):15. |
入库方式： OAI收割
来源：武汉植物园
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