Complete Chloroplast Genomes of Chlorophytum comosum and Chlorophytum gallabatense: Genome Structures, Comparative and Phylogenetic Analysis
文献类型：期刊论文
| 作者 | Munyao, Jacinta N.2,3,4; Dong, Xiang2,3,4; Yang, Jia-Xin3,4; Mbandi, Elijah M.2,3,4; Wanga, Vincent O.2,3,4; Oulo, Millicent A.2,3,4; Saina, Josphat K.2,3,4; Musili, Paul M.1; Hu, Guang-Wan2,3,4 |
| 刊名 | PLANTS-BASEL
 |
| 出版日期 | 2020-03-01 |
| 卷号 | 9期号:3页码:18 |
| 关键词 | C. comosum C. gallabatense chloroplast genome phylogenetic analysis |
| DOI | 10.3390/plants9030296 |
| 英文摘要 | The genus Chlorophytum includes many economically important species well-known for medicinal, ornamental, and horticultural values. However, to date, few molecular genomic resources have been reported for this genus. Therefore, there is limited knowledge of phylogenetic studies, and the available chloroplast (cp) genome of Chlorophytum (C. rhizopendulum) does not provide enough information on this genus. In this study, we present genomic resources for C. comosum and C. gallabatense, which had lengths of 154,248 and 154,154 base pairs (bp), respectively. They had a pair of inverted repeats (IRa and IRb) of 26,114 and 26,254 bp each in size, separating the large single-copy (LSC) region of 84,004 and 83,686 bp from the small single-copy (SSC) region of 18,016 and 17,960 bp in C. comosum and C. gallabatense, respectively. There were 112 distinct genes in each cp genome, which were comprised of 78 protein-coding genes, 30 tRNA genes, and four rRNA genes. The comparative analysis with five other selected species displayed a generally high level of sequence resemblance in structural organization, gene content, and arrangement. Additionally, the phylogenetic analysis confirmed the previous phylogeny and produced a phylogenetic tree with similar topology. It showed that the Chlorophytum species (C. comosum, C. gallabatense and C. rhizopendulum) were clustered together in the same clade with a closer relationship than other plants to the Anthericum ramosum. This research, therefore, presents valuable records for further molecular evolutionary and phylogenetic studies which help to fill the gap in genomic resources and resolve the taxonomic complexes of the genus. |
| 资助项目 | Backbone Talents Project of Wuhan Botanical Garden, CAS[Y655301M01] ; Sino-Africa Joint Research Center, CAS[SAJC201614] ; National Natural Science Foundation of China[31970211] |
| WOS研究方向 | Plant Sciences |
| 语种 | 英语 |
| WOS记录号 | WOS:000525315000040 |
| 出版者 | MDPI |
| 源URL | [http://202.127.146.157/handle/2RYDP1HH/15148]  |
| 专题 | 中国科学院武汉植物园 |
| 通讯作者 | Hu, Guang-Wan |
| 作者单位 | 1.Natl Museums Kenya, East Africa Herbarium, POB 45166 00100, Nairobi, Kenya 2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 3.Chinese Acad Sci, Sino Africa Joint Res Ctr, Wuhan 430074, Peoples R China 4.Chinese Acad Sci, CAS Key Lab Plant Germplasm Enhancement & Special, Wuhan Bot Garden, Wuhan 430074, Peoples R China |
| 推荐引用方式 GB/T 7714 | Munyao, Jacinta N.,Dong, Xiang,Yang, Jia-Xin,et al. Complete Chloroplast Genomes of Chlorophytum comosum and Chlorophytum gallabatense: Genome Structures, Comparative and Phylogenetic Analysis[J]. PLANTS-BASEL,2020,9(3):18. |
| APA | Munyao, Jacinta N..,Dong, Xiang.,Yang, Jia-Xin.,Mbandi, Elijah M..,Wanga, Vincent O..,...&Hu, Guang-Wan.(2020).Complete Chloroplast Genomes of Chlorophytum comosum and Chlorophytum gallabatense: Genome Structures, Comparative and Phylogenetic Analysis.PLANTS-BASEL,9(3),18. |
| MLA | Munyao, Jacinta N.,et al."Complete Chloroplast Genomes of Chlorophytum comosum and Chlorophytum gallabatense: Genome Structures, Comparative and Phylogenetic Analysis".PLANTS-BASEL 9.3(2020):18. |
入库方式： OAI收割
来源：武汉植物园
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