eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data
文献类型：期刊论文
| 作者 | Breeze, Charles E.1,2; Beck, Stephan1; Reynolds, Alex P.2; Lazar, John2; Neph, Shane2; Vierstra, Jeff2; Stamatoyannopoulos, John A.2; van Dongen, Jenny3; Dunham, Ian4; Bourque, Guillaume5,6 |
| 刊名 | BIOINFORMATICS
 |
| 出版日期 | 2019 |
| 卷号 | 35期号:22页码:4767-4769 |
| 关键词 | Zizyphus rhamnaceae Alternaria toxins nutritients and metabolites Orbitrap |
| ISSN号 | 1367-4803 |
| DOI | 10.1093/bioinformatics/btz456 |
| 文献子类 | Article |
| 英文摘要 | The Summary: The Illumina Infinium EPIC BeadChip is a new high-throughput array for DNA methylation analysis, extending the earlier 450k array by over 400 000 new sites. Previously, a method named eFORGE was developed to provide insights into cell type-specific and cell-composition effects for 450k data. Here, we present a significantly updated and improved version of eFORGE that can analyze both EPIC and 450k array data. New features include analysis of chromatin states, transcription factor motifs and DNase I footprints, providing tools for epigenome-wide association study interpretation and epigenome editing. |
| 学科主题 | Agriculture ; Chemistry ; Food Science & Technology |
| WOS关键词 | CITRUS BROWN SPOT ; ZIZIPHUS-JUJUBA ; ANTIOXIDATIVE ACTIVITIES ; 1ST REPORT ; ROT ; IDENTIFICATION ; FRUIT ; PATHOTYPE ; FUSARIUM ; KOREA |
| 语种 | 英语 |
| CSCD记录号 | CSCD:31161210 |
| WOS记录号 | WOS:000501728500031 |
| 出版者 | OXFORD UNIV PRESS |
| 版本 | 出版稿 |
| 源URL | [http://202.127.25.144/handle/331004/1184]  |
| 专题 | 中国科学院上海生命科学研究院营养科学研究所 |
| 作者单位 | 1.UCL, UCL Canc Inst, Med Genom Grp, London WC1E 6BT, England; 2.Altius Inst Biomed Sci, Seattle, WA 98121 USA; 3.Vrije Univ Amsterdam, Dept Biol Psychol, NL-1081 BT Amsterdam, Netherlands; 4.EBI, EMBL, Cambridge CB10 1SD, England; 5.McGill Univ, Dept Human Genet, Montreal, PQ H3A 0G1, Canada; 6.Genome Quebec Innovat Ctr, Montreal, PQ H3A 0G1, Canada; 7.Chinese Acad Sci, CAS MPG Partner Inst Computat Biol, Shanghai Inst Biol Sci, CAS Key Lab Computat Biol, Shanghai 200031, Peoples R China; 8.UCL, UCL Canc Inst, Stat Genom Grp, London WC1E 6BT, England, |
| 推荐引用方式 GB/T 7714 | Breeze, Charles E.,Beck, Stephan,Reynolds, Alex P.,et al. eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data[J]. BIOINFORMATICS,2019,35(22):4767-4769. |
| APA | Breeze, Charles E..,Beck, Stephan.,Reynolds, Alex P..,Lazar, John.,Neph, Shane.,...&,.(2019).eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data.BIOINFORMATICS,35(22),4767-4769. |
| MLA | Breeze, Charles E.,et al."eFORGE v2.0: updated analysis of cell type-specific signal in epigenomic data".BIOINFORMATICS 35.22(2019):4767-4769. |
入库方式： OAI收割
来源：上海营养与健康研究所
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