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Transcriptome analysis reveals the effects of sand substrate removal and body colour change of kuruma shrimp,Marsupenaeus japonicus

文献类型：期刊论文

作者Zhao, Jichen2; Liu, Xueting2; Liao, Xuzheng2; He, Zihao2; Chen, Xieyan2; Sun, Chengbo2; Ni, Zuotao1
刊名AQUACULTURE RESEARCH
出版日期2020-10-05
页码12
关键词body colour Marsupenaeus japonicus physiological activities substrates transcriptome
ISSN号1355-557X
DOI10.1111/are.14915
通讯作者Sun, Chengbo(scb248@126.com) ; Ni, Zuotao(nizuotao07@qdio.ac.cn)
英文摘要Kuruma shrimp,Marsupenaeus japonicus,is an important economic species widely cultured in the world. Kuruma shrimp usually are cultured in the ponds with sand substrates, which could cause multiple pollutions to the environment. In this study, we investigated a new kuruma shrimp culture pattern by removing the sand substrates at the pond bottom and replacing with plastic membranes. The result showed that kuruma shrimp survived in the pond without sand substrates. The body colour of adult kuruma shrimp in the experimental group was dark blue, obviously different from the brown body colour in shrimps cultured under normal conditions. A comprehensive study of gene profiling by transcriptome analysis provided a new perspective to understand the impact of removing sand substrates on kuruma shrimp. A total of 60,780 genes were obtained in the transcriptome sequencing. 1,005 DEGs were identified in gills with 427 genes were up-regulated and 578 genes were down-regulated. Meanwhile, only 115 DEGs were identified in hepatopancreas with 41 genes were up-regulated and 74 genes were down-regulated. Multiple essential genes were inhibited, such as actin. The expression levels of crustacyanin subunit A and C were significantly higher in the shrimp cultured without sand substrates than that shrimp cultured in normal conditions. The body colour change may be a self-protection strategy for kuruma shrimp to deal with environmental challenges.
资助项目Project of 2019 Annual Guangdong Provincial Special Financial Fund[2319412525] ; Guangdong Province Key Field R&D Program Project[2020B0202010009] ; Fangchenggang Science and Technology Plan Project[AD19008017] ; Fund of Southern Marine Science and Engineering Guangdong Laboratory(Zhanjiang)[013S19006-007]
WOS研究方向Fisheries
语种英语
WOS记录号WOS:000575106900001
出版者WILEY
源URL[http://ir.qdio.ac.cn/handle/337002/168849]  
专题中国科学院海洋研究所
通讯作者Sun, Chengbo; Ni, Zuotao
作者单位1.Chinese Acad Sci, Inst Oceanol, Qingdao 266071, Peoples R China
2.Guangdong Ocean Univ, Coll Fisheries, Zhanjiang 524088, Peoples R China
推荐引用方式
GB/T 7714		 Zhao, Jichen,Liu, Xueting,Liao, Xuzheng,et al. Transcriptome analysis reveals the effects of sand substrate removal and body colour change of kuruma shrimp,Marsupenaeus japonicus[J]. AQUACULTURE RESEARCH,2020:12.
APA Zhao, Jichen.,Liu, Xueting.,Liao, Xuzheng.,He, Zihao.,Chen, Xieyan.,...&Ni, Zuotao.(2020).Transcriptome analysis reveals the effects of sand substrate removal and body colour change of kuruma shrimp,Marsupenaeus japonicus.AQUACULTURE RESEARCH,12.
MLA Zhao, Jichen,et al."Transcriptome analysis reveals the effects of sand substrate removal and body colour change of kuruma shrimp,Marsupenaeus japonicus".AQUACULTURE RESEARCH (2020):12.

入库方式： OAI收割

来源：海洋研究所

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