中国科学院机构知识库网格
Chinese Academy of Sciences Institutional Repositories Grid
Reanalysis and Revision of the Complete Mitochondrial Genome of Artemia urmiana Gunther, 1899 (Crustacea: Anostraca)

文献类型:期刊论文

作者Asem, Alireza1,2; Eimanifar, Amin; Li, Weidong3; Shen, Chun-Yang4; Shikhsarmast, Farnaz Mahmoudi1,5; Dan, Ya-Ting6; Lu, Hao1,2; Zhou, Yang7; Chen, You1,8; Wang, Pei-Zheng1,8
刊名DIVERSITY-BASEL
出版日期2021
卷号13期号:1页码:17
关键词brine shrimp Artemia mitochondrial genome phylogeny nucleotide composition maternal ancestor Asia
DOI10.3390/d13010014
英文摘要In the previously published mitochondrial genome sequence of Artemia urmiana (NC_021382 [JQ975176]), the taxonomic status of the examined Artemia had not been determined, due to parthenogenetic populations coexisting with A. urmiana in Urmia Lake. Additionally, NC_021382 [JQ975176] has been obtained with pooled cysts of Artemia (0.25 g cysts consists of 20,000-25,000 cysts), not a single specimen. With regard to coexisting populations in Urmia Lake, and intra- and inter-specific variations in the pooled samples, NC_021382 [JQ975176] cannot be recommended as a valid sequence and any attempt to attribute it to A. urmiana or a parthenogenetic population is unreasonable. With the aid of next-generation sequencing methods, we characterized and assembled a complete mitochondrial genome of A. urmiana with defined taxonomic status. Our results reveal that in the previously published mitogenome (NC_021382 [JQ975176]), tRNA-Phe has been erroneously attributed to the heavy strand but it is encoded in the light strand. There was a major problem in the position of the ND5. It was extended over the tRNA-Phe, which is biologically incorrect. We have also identified a partial nucleotide sequence of 311 bp that was probably erroneously duplicated in the assembly of the control region of NC_021382 [JQ975176], which enlarges the control region length by 16%. This partial sequence could not be recognized in our assembled mitogenome as well as in 48 further examined specimens of A. urmiana. Although, only COX1 and 16S genes have been widely used for phylogenetic studies in Artemia, our findings reveal substantial differences in the nucleotide composition of some other genes (including ATP8, ATP6, ND3, ND6, ND1 and COX3) among Artemia species. It is suggested that these markers should be included in future phylogenetic studies.
资助项目Hainan Province Science and Technology Department Key Research and Development Program[ZDYF2019154] ; Key Laboratory of Utilization and Conservation for Tropical Marine Bioresources, Ministry of Education[UCTMB202013]
WOS研究方向Biodiversity & Conservation ; Environmental Sciences & Ecology
语种英语
出版者MDPI
WOS记录号WOS:000611165300001
资助机构Hainan Province Science and Technology Department Key Research and Development Program ; Key Laboratory of Utilization and Conservation for Tropical Marine Bioresources, Ministry of Education
源URL[http://ir.idsse.ac.cn/handle/183446/8377]  
专题研究生部
深海科学研究部_深海生物学研究室_海洋生物生态与进化研究组
通讯作者Li, Weidong; Wang, Pei-Zheng
作者单位1.Hainan Trop Ocean Univ, Key Lab Utilizat & Protect Trop Marine Living Res, Sanya 572000, Peoples R China
2.Hainan Trop Ocean Univ, Coll Fisheries & Life Sci, Sanya 572000, Peoples R China
3.Hainan Trop Ocean Univ, Coll Ecol & Environm, Haikou 570000, Hainan, Peoples R China
4.Chengde Med Univ, Dept Biol, Chengde 067000, Peoples R China
5.Hainan Trop Ocean Univ, Coll Marine Sci & Technol, Sanya 572000, Peoples R China
6.Shanghai Ocean Univ, Coll Marine Sci, Shanghai 200000, Peoples R China
7.Chinese Acad Sci, Inst Deep Sea Sci & Engn, Sanya 572000, Peoples R China
8.Hainan Trop Ocean Univ, Coll Ecol & Environm, Sanya 572000, Peoples R China
9.Heidelberg Univ, Inst Pharm & Mol Biotechnol IPMB, Neuenheimer Feld 364, D-69120 Heidelberg, Germany
推荐引用方式
GB/T 7714
Asem, Alireza,Eimanifar, Amin,Li, Weidong,et al. Reanalysis and Revision of the Complete Mitochondrial Genome of Artemia urmiana Gunther, 1899 (Crustacea: Anostraca)[J]. DIVERSITY-BASEL,2021,13(1):17.
APA Asem, Alireza.,Eimanifar, Amin.,Li, Weidong.,Shen, Chun-Yang.,Shikhsarmast, Farnaz Mahmoudi.,...&Wink, Michael.(2021).Reanalysis and Revision of the Complete Mitochondrial Genome of Artemia urmiana Gunther, 1899 (Crustacea: Anostraca).DIVERSITY-BASEL,13(1),17.
MLA Asem, Alireza,et al."Reanalysis and Revision of the Complete Mitochondrial Genome of Artemia urmiana Gunther, 1899 (Crustacea: Anostraca)".DIVERSITY-BASEL 13.1(2021):17.

入库方式: OAI收割

来源:深海科学与工程研究所

浏览0
下载0
收藏0
其他版本

除非特别说明,本系统中所有内容都受版权保护,并保留所有权利。