The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)
文献类型:期刊论文
作者 | Zhou, Yang1,2; Feng, Chenguang3,4; Pu, Yujin1,2; Liu, Jun1; Liu, Ruoyu1,2; Zhang, Haibin1 |
刊名 | GENOME BIOLOGY AND EVOLUTION |
出版日期 | 2021-02-01 |
卷号 | 13期号:2页码:6 |
ISSN号 | 1759-6653 |
关键词 | cold-water coral deep sea genome nanopore |
DOI | 10.1093/gbe/evaa265 |
英文摘要 | Cold-water corals (CWCs) are important habitats for creatures in the deep-sea environment, but they have been degraded by anthropogenic activity. So far, no genome for any CWC has been reported. Here, we report a draft genome of Trachythela sp., which represents the first genome of CWCs to date. In total, 56 and 65?Gb of raw reads were generated from Illumina and Nanopore sequencing platforms, respectively. The final assembled genome was 578.26?Mb, which consisted of 396 contigs with a contig N50 of 3.56?Mb, and the genome captured 90.1% of the metazoan Benchmarking Universal Single-Copy Orthologs. We identified 335?Mb (57.88% of the genome) of repetitive elements, which is a higher proportion compared with others in the Cnidarians, along with 35,305 protein-coding genes. We also detected 483 expanded and 51 contracted gene families, and many of them were associated with longevity, ion transposase, heme-binding nicotinamide adenine dinucleotide, and metabolic regulators of transcription. Overall, we believe this genome will serve as an important resource for studies on community protection for CWCs. |
资助项目 | Major Scientific and Technological Projects of Hainan Province[ZDKJ2019011] ; National Key Research and Development Program of China[2016YFC0304905] ; National Key Research and Development Program of China[2018YFC0309804] ; Strategic Priority Research Program of the Chinese Academy of Sciences[XDA22040502] |
WOS研究方向 | Evolutionary Biology ; Genetics & Heredity |
语种 | 英语 |
出版者 | OXFORD UNIV PRESS |
WOS记录号 | WOS:000637215800017 |
资助机构 | Major Scientific and Technological Projects of Hainan Province ; National Key Research and Development Program of China ; Strategic Priority Research Program of the Chinese Academy of Sciences |
版本 | 出版稿 |
源URL | [http://ir.idsse.ac.cn/handle/183446/8642] |
专题 | 研究生部 深海科学研究部_深海生物学研究室_海洋生物生态与进化研究组 |
通讯作者 | Zhang, Haibin |
作者单位 | 1.Chinese Acad Sci, Inst Deep Sea Sci & Engn, Sanya, Peoples R China 2.Univ Chinese Acad Sci, Beijing, Peoples R China 3.Northwestern Polytech Univ, Sch Ecol & Environm, Xian, Peoples R China 4.Chinese Acad Sci, Key Lab Aquat Biodivers & Conservat, Inst Hydrobiol, Wuhan, Peoples R China |
推荐引用方式 GB/T 7714 | Zhou, Yang,Feng, Chenguang,Pu, Yujin,et al. The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)[J]. GENOME BIOLOGY AND EVOLUTION,2021,13(2):6. |
APA | Zhou, Yang,Feng, Chenguang,Pu, Yujin,Liu, Jun,Liu, Ruoyu,&Zhang, Haibin.(2021).The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae).GENOME BIOLOGY AND EVOLUTION,13(2),6. |
MLA | Zhou, Yang,et al."The First Draft Genome of a Cold-Water Coral Trachythela sp. (Alcyonacea: Stolonifera: Clavulariidae)".GENOME BIOLOGY AND EVOLUTION 13.2(2021):6. |
入库方式: OAI收割
来源:深海科学与工程研究所
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