Plant-GQ: An Integrative Database of G-Quadruplex in Plant
文献类型：期刊论文
| 作者 | Ge, Fangfang3; Wang, Yi1,4; Li, Huayang3; Zhang, Rui3; Wang, Xiaotong3; Li, Qingyun3; Liang, Zhenchang1,4; Yang, Long3 |
| 刊名 | JOURNAL OF COMPUTATIONAL BIOLOGY
 |
| 出版日期 | 2019 |
| 卷号 | 26期号:9页码:1013-1019 |
| 关键词 | database G-quadruplex plant |
| ISSN号 | 1066-5277 |
| DOI | 10.1089/cmb.2019.0010 |
| 文献子类 | Article |
| 英文摘要 | G-quadruplex (G-Q) is advanced DNA or RNA secondary structures frequently found in plant and involved in important biological processes such as transcription, translation, and telomere maintenance. Although some databases and tools were developed for predicting and studying G-Q, none of them was for plant. With the development of next-generation sequencing technology, a large number of plant genomes have been assembled and annotated to provide opportunities for mining G-Q. Plant G-quadruplex database (Plant-GQ) was constructed for predicting G-Q in 195 plants. It has a total of 626,341,645 predicted G-Qs. The database contains four major parts: Search, Tools, JBrowse, and Download. Not only G-Q information but also online forecasting tool can be retrieved and obtained from Plant-GQ. It can also browse and analyze G-Q information by JBrowse in a graph visualization interface. Considering the key role of G-Q in plant, this database will play an important status in the study of the structure, function, and biological relevance of G-Q in plant. |
| 学科主题 | Biochemical Research Methods ; Biotechnology & Applied Microbiology ; Computer Science, Interdisciplinary Applications ; Mathematical & Computational Biology ; Statistics & Probability |
| 出版地 | NEW ROCHELLE |
| 电子版国际标准刊号 | 1557-8666 |
| WOS关键词 | TELOMERIC G-QUADRUPLEX ; GENOME-WIDE ; DNA ; MOTIFS ; INHIBITION ; SEQUENCES ; PROMOTER ; REGION ; SERVER ; GENE |
| WOS研究方向 | Biochemistry & Molecular Biology ; Biotechnology & Applied Microbiology ; Computer Science ; Mathematical & Computational Biology ; Mathematics |
| 语种 | 英语 |
| WOS记录号 | WOS:000463769200001 |
| 出版者 | MARY ANN LIEBERT, INC |
| 资助机构 | Foundation of Shandong Province Modern Agricultural Technology System Innovation Team [SDAIT-25-02] ; Open Project Program of Beijing Key Laboratory of Grape Science and Enology |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/19612]  |
| 专题 | 中科院北方资源植物重点实验室 |
| 作者单位 | 1.Chinese Acad Sci, Inst Bot, Beijing Key Lab Grape Sci & Enol, Beijing, Peoples R China 2.Chinese Acad Sci, Inst Bot, Key Lab Plant Resource, Beijing, Peoples R China 3.Shandong Agr Univ, Agr Big Data Res Ctr, Tai An 271018, Shandong, Peoples R China 4.Shandong Agr Univ, Coll Plant Protect, Tai An 271018, Shandong, Peoples R China |
| 推荐引用方式 GB/T 7714 | Ge, Fangfang,Wang, Yi,Li, Huayang,et al. Plant-GQ: An Integrative Database of G-Quadruplex in Plant[J]. JOURNAL OF COMPUTATIONAL BIOLOGY,2019,26(9):1013-1019. |
| APA | Ge, Fangfang.,Wang, Yi.,Li, Huayang.,Zhang, Rui.,Wang, Xiaotong.,...&Yang, Long.(2019).Plant-GQ: An Integrative Database of G-Quadruplex in Plant.JOURNAL OF COMPUTATIONAL BIOLOGY,26(9),1013-1019. |
| MLA | Ge, Fangfang,et al."Plant-GQ: An Integrative Database of G-Quadruplex in Plant".JOURNAL OF COMPUTATIONAL BIOLOGY 26.9(2019):1013-1019. |
入库方式： OAI收割
来源：植物研究所
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