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Whole-genome resequencing of 472 Vitis accessions for grapevine diversity and demographic history analyses

文献类型：期刊论文

作者Liang, Zhenchang9; Duan, Shengchang8,11; Sheng, Jun5,7,11; Zhu, Shusheng5,11; Ni, Xuemei4,6; Shao, Jianhui5; Liu, Chonghuai2; Nick, Peter1; Du, Fei5; Fan, Peige
刊名NATURE COMMUNICATIONS
出版日期2019
卷号10
ISSN号2041-1723
DOI10.1038/s41467-019-09135-8
文献子类Article
英文摘要Understanding the Vitis species at the genomic level is important for cultivar improvement of grapevine. Here we report whole-genome genetic variation at single-base resolution of 472 Vitis accessions, which cover 48 out of 60 extant Vitis species from a wide geographic distribution. The variation helps to identify a recent dramatic expansion and contraction of effective population size in the domesticated grapevines and that cultivars from the pan Black Sea region have a unique demographic history in comparison to the other domesticated cultivars. We also find selective sweeps for berry edibility and stress resistance improvement. Furthermore, we find associations between candidate genes and important agronomic traits, such as berry shape and aromatic compounds. These results demonstrate resource value of the resequencing data for illuminating the evolutionary biology of Vitis species and providing targets for grapevine genetic improvement.
学科主题Multidisciplinary Sciences
出版地LONDON
WOS关键词GENETIC DIVERSITY ; DOMESTICATION HISTORY ; PHYLOGENETIC ANALYSIS ; WILD ; VINIFERA ; REVEALS ; ASSOCIATION ; THOUSANDS ; ALIGNMENT ; MUTATION
WOS研究方向Science & Technology - Other Topics
语种英语
WOS记录号WOS:000461022600003
出版者NATURE PUBLISHING GROUP
资助机构National Key Research and Development Program of China [2018YFD1000105] ; State Key Laboratory of Agricultural Genomics [2011DQ782025] ; Key Lab of Agricultural Genomics (Chinese Ministry of Agriculture), the Agricultural Breeding Project of Ningxia Hui Autonomous Region [NXNYYZ20150203]
源URL[http://ir.ibcas.ac.cn/handle/2S10CLM1/19709]  
专题中科院北方资源植物重点实验室
作者单位1.Chinese Acad Agr Sci, Zhengzhou Fruit Res Inst, Zhengzhou 450009, Henan, Peoples R China
2.BGI Shenzhen, BGI Inst Appl Agr, Shenzhen 518120, Peoples R China
3.Karlsruhe Inst Technol, Bot Inst, D-76128 Karlsruhe, Germany
4.Yunnan Agr Univ, Key Lab Agro Biodivers & Pest Control, Minist Educ, Kunming 650201, Yunnan, Peoples R China
5.Yunnan Res Inst Local Plateau Agr & Ind, Kunming 650201, Yunnan, Peoples R China
6.BGI Shenzhen, BGI, Shenzhen 518120, Peoples R China
7.Nowbio Biotechnol Co, Kunming 650201, Yunnan, Peoples R China
8.Yunnan Agr Univ, State Key Lab Conservat & Utilizat Bioresources, Kunming 650201, Yunnan, Peoples R China
9.Chinese Acad Sci, Inst Bot, Beijing Key Lab Grape Sci & Enol, Lab Plant Resources, Beijing 100093, Peoples R China
10.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
推荐引用方式
GB/T 7714		 Liang, Zhenchang,Duan, Shengchang,Sheng, Jun,et al. Whole-genome resequencing of 472 Vitis accessions for grapevine diversity and demographic history analyses[J]. NATURE COMMUNICATIONS,2019,10.
APA Liang, Zhenchang.,Duan, Shengchang.,Sheng, Jun.,Zhu, Shusheng.,Ni, Xuemei.,...&Dong, Yang.(2019).Whole-genome resequencing of 472 Vitis accessions for grapevine diversity and demographic history analyses.NATURE COMMUNICATIONS,10.
MLA Liang, Zhenchang,et al."Whole-genome resequencing of 472 Vitis accessions for grapevine diversity and demographic history analyses".NATURE COMMUNICATIONS 10(2019).

入库方式： OAI收割

来源：植物研究所

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