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NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants

文献类型：期刊论文

作者Zhao, Lianhe5,6; Wang, Jiajia7,8; Li, Yanyan7,8; Song, Tingrui7; Wu, Yang5; Fang, Shuangsang9; Bu, Dechao5; Li, Hui5; Sun, Liang5; Pei, Dong10
刊名NUCLEIC ACIDS RESEARCH
出版日期2021-01-08
卷号49期号:D1页码:D165-D171
ISSN号0305-1048
DOI10.1093/nar/gkaa1046
英文摘要NONCODE (http://www.noncode.org/) is a comprehensive database of collection and annotation of noncoding RNAs, especially long non-coding RNAs (lncRNAs) in animals. NONCODEV6 is dedicated to providing the full scope of lncRNAs across plants and animals. The number of lncRNAs in NONCODEV6 has increased from 548 640 to 644 510 since the last update in 2017. The number of human lncRNAs has increased from 172 216 to 173 112. The number of mouse lncRNAs increased from 131 697 to 131 974. The number of plant lncRNAs is 94 697. The relationship between lncRNAs in human and cancer were updated with transcriptome sequencing profiles. Three important new features were also introduced in NONCODEV6: (i) updated human lncRNA-disease relationships, especially cancer; (ii) lncRNA annotations with tissue expression profiles and predicted function in five common plants; iii) lncRNAs conservation annotation at transcript level for 23 plant species.
资助项目National Key R&D Program of China[2018YFD1000604] ; National Key R&D Program of China[2016YFC0901702] ; National Key R&D Program of China[2019YFC1709801] ; National Key R&D Program of China[2018YFC1313000] ; National Key R&D Program of China[2018YFC1313001] ; National Natural Science Foundation of China[31672126] ; National Natural Science Foundation of China[91940306] ; National Natural Science Foundation of China[31871294] ; National Natural Science Foundation of China[91740113] ; National Natural Science Foundation of China[32070670] ; Strategic Priority Research Program of the Chinese Academy of Sciences[XDA12030100] ; Strategic Priority Research Program of the Chinese Academy of Sciences[XDB38040300] ; Natural Science Foundation for Young Scholars of China[31701141] ; Innovation Project for Institute of Computing Technology, CAS[20186060] ; China Postdoctoral Science Foundation[2019M660033] ; China Postdoctoral Innovative Talent Foundation[BX20200068] ; 13th Five-year Informatization Plan of Chinese Academy of Sciences[XXH13505-05-02] ; Science and Technology Service Program of the Chinese Academy of Sciences[KFJ-STS-ZDTP-060] ; National Key Research and Development Program[2016YFC0901702]
WOS研究方向Biochemistry & Molecular Biology
语种英语
出版者OXFORD UNIV PRESS
WOS记录号WOS:000608437800023
源URL[http://119.78.100.204/handle/2XEOYT63/16470]  
专题中国科学院计算技术研究所期刊论文_英文
通讯作者Chen, Runsheng; Zhao, Yi; He, Shunmin
作者单位1.Zhejiang A&F Univ, Nurturing Stn, State Key Lab Subtrop Silviculture, Hangzhou 311300, Peoples R China
2.Shanghai Jiao Tong Univ, Bio X Inst, Key Lab Genet Dev & Neuropsychiat Disorders, Minist Educ, Shanghai 518102, Peoples R China
3.Guangdong Geneway Decoding Biotech Co Ltd, Foshan 528316, Peoples R China
4.Chinese Acad Sci, Natl Genom Data Ctr, Beijing 100101, Peoples R China
5.Chinese Acad Sci, Adv Comp Res Ctr, Inst Comp Technol, Key Lab Intelligent Informat Proc, Beijing 100190, Peoples R China
6.Univ Chinese Acad Sci, Beijing 100049, Peoples R China
7.Chinese Acad Sci, Ctr Big Data Res Hlth, Inst Biophys, Key Lab RNA Biol, Beijing 100101, Peoples R China
8.Univ Chinese Acad Sci, Coll Life Sci, Beijing 100049, Peoples R China
9.Beijing Univ Chinese Med, Beijing 100029, Peoples R China
10.Chinese Acad Forestry, Res Inst Forestry, State Key Lab Tree Genet & Breeding, Beijing 100091, Peoples R China
推荐引用方式
GB/T 7714		 Zhao, Lianhe,Wang, Jiajia,Li, Yanyan,et al. NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants[J]. NUCLEIC ACIDS RESEARCH,2021,49(D1):D165-D171.
APA Zhao, Lianhe.,Wang, Jiajia.,Li, Yanyan.,Song, Tingrui.,Wu, Yang.,...&He, Shunmin.(2021).NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants.NUCLEIC ACIDS RESEARCH,49(D1),D165-D171.
MLA Zhao, Lianhe,et al."NONCODEV6: an updated database dedicated to long non-coding RNA annotation in both animals and plants".NUCLEIC ACIDS RESEARCH 49.D1(2021):D165-D171.

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