High-Quality Genome Assembly and Comprehensive Transcriptome of the Painted Lady Butterfly Vanessa cardui
文献类型：期刊论文
| 作者 | Zhang, Linlin1,2,3,4; Steward, Rachel A.5; Wheat, Christopher W.5; Reed, Robert D.6 |
| 刊名 | GENOME BIOLOGY AND EVOLUTION
 |
| 出版日期 | 2021-07-01 |
| 卷号 | 13期号:7页码:7 |
| ISSN号 | 1759-6653 |
| 关键词 | PacBio sequencing de novo genome assembly RNA-seq butterfly wing color patterning |
| DOI | 10.1093/gbe/evab145 |
| 通讯作者 | Zhang, Linlin(linlinzhang@qdio.ac.cn) ; Reed, Robert D.(robertreed@cornell.edu) |
| 英文摘要 | The painted lady butterfly, Vanessa cardui, has the longest migration routes, the widest hostplant diversity, and one of the most complex wing patterns of any insect. Due to minimal culturing requirements, easily characterized wing pattern elements, and technical feasibility of CRISPR/Cas9 genome editing, V. cardui is emerging as a functional genomics model for diverse research programs. Here, we report a high-quality, annotated genome assembly of the V. cardui genome, generated using 84 x coverage of PacBiolong-readdata, which we assembled into 205 contigs with a total length of 425.4 Mb(N50 = 10.3Mb). The genome was very complete (single-copy complete Benchmarking Universal Single-Copy Orthologs [BUSCO] 97%), with contigs assembled into presumptive chromosomes using synteny analyses. Our annotation used embryonic, larval, and pupal transcriptomes, and 20 transcriptomes across five different wing developmental stages. Gene annotations showed a high level of accuracy and completeness, with 14,437 predicted protein-coding genes. This annotated genome assembly constitutes an important resource for diverse functional genomic studies ranging from the developmental genetic basis of butterfly color pattern, to coevolution with diverse hostplants. |
| 资助项目 | United States National Science Foundation[IOS-1656514] ; United States National Science Foundation[IOS-1753559] ; Strategic Priority Research Program of the Chinese Academy of Sciences[XDB42000000] ; National Natural Science Foundation of China[41976088] ; Pilot National Laboratory for Marine Science and Technology[YJ2019NO01] ; Key Development Project of Centre for Ocean Mega-Research of Science, Chinese Academy of Science[COMS2019R01] ; Carl Tryggers Stiftelse anslag[CTS 18:415] ; Swedish Research Council[2017-04386] |
| WOS研究方向 | Evolutionary Biology ; Genetics & Heredity |
| 语种 | 英语 |
| 出版者 | OXFORD UNIV PRESS |
| WOS记录号 | WOS:000690270100027 |
| 源URL | [http://ir.qdio.ac.cn/handle/337002/176305]  |
| 专题 | 海洋研究所_深海极端环境与生命过程研究中心 |
| 通讯作者 | Zhang, Linlin; Reed, Robert D. |
| 作者单位 | 1.Chinese Acad Sci, Ctr Ocean Megasci, Inst Oceanol, CAS & Shandong Prov Key Lab Expt Marine Biol, Qingdao, Peoples R China 2.Chinese Acad Sci, Ctr Ocean Megasci, Inst Oceanol, Ctr Deep Sea Res, Qingdao, Peoples R China 3.Qingdao Natl Lab Marine Sci & Technol, Lab Marine Biol & Biotechnol, Qingdao, Peoples R China 4.Univ Chinese Acad Sci, Coll Earth Sci, Beijing, Peoples R China 5.Stockholm Univ, Dept Zool, Stockholm, Sweden 6.Cornell Univ, Dept Ecol & Evolutionary Biol, Ithaca, NY 14853 USA |
| 推荐引用方式 GB/T 7714 | Zhang, Linlin,Steward, Rachel A.,Wheat, Christopher W.,et al. High-Quality Genome Assembly and Comprehensive Transcriptome of the Painted Lady Butterfly Vanessa cardui[J]. GENOME BIOLOGY AND EVOLUTION,2021,13(7):7. |
| APA | Zhang, Linlin,Steward, Rachel A.,Wheat, Christopher W.,&Reed, Robert D..(2021).High-Quality Genome Assembly and Comprehensive Transcriptome of the Painted Lady Butterfly Vanessa cardui.GENOME BIOLOGY AND EVOLUTION,13(7),7. |
| MLA | Zhang, Linlin,et al."High-Quality Genome Assembly and Comprehensive Transcriptome of the Painted Lady Butterfly Vanessa cardui".GENOME BIOLOGY AND EVOLUTION 13.7(2021):7. |
入库方式： OAI收割
来源：海洋研究所
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