中国科学院机构知识库网格
Chinese Academy of Sciences Institutional Repositories Grid
Combined genotype and phenotype analyses reveal patterns of genomic adaptation to local environments in the subtropical oak Quercus acutissima

文献类型:期刊论文

作者Gao, Jie; Liu, Zhi-Long; Zhao, Wei; Tomlinson, Kyle W.; Xia, Shang-Wen; Zeng, Qing-Yin; Wang, Xiao-Ru; Chen, Jin8
刊名JOURNAL OF SYSTEMATICS AND EVOLUTION
出版日期2021
卷号59期号:3页码:541-556
关键词demographic history isolation by distance isolation by environment local adaptation phenotype variation RAD sequencing
ISSN号1674-4918
DOI10.1111/jse.12568
英文摘要

Understanding the effects of the demographic dynamics and environmental heterogeneity on the genomic variation of forest species is important, not only for uncovering the evolutionary history of the species, but also for predicting their ability to adapt to climate change. In this study, we combined a common garden experiment with range-wide population genomics analyses to infer the demographic history and characterize patterns of local adaptation in a subtropical oak species, Quercus acutissima (Carruthers). We scanned approximately 8% of the oak genome using a balanced representation of both genic and non-genic regions and identified a total of 55 361 single nucleotide polymorphisms (SNPs) in 167 trees. Genomic diversity analyses revealed an east-west split in the species distribution range. Coalescent-based model simulations inferred a late Pleistocene divergence in Q. acutissima between the east and west groups as well as subsequent preglaciation population expansion events. Consistent with observed genetic differentiation, morphological traits also showed east-west differentiation and the biomass allocation in seedlings was significantly associated with precipitation. Environment was found to have a significant and stronger impact on the non-neutral than the neutral SNPs, and also significantly associated with the phenotypic differentiation, suggesting that, apart from the geography, environment had played a role in determining non-neutral and phenotypic variation. Our approach, which combined a common garden experiment with landscape genomics data, validated the hypothesis of local adaptation of this long-lived oak tree of subtropical China. Our study joins the small number of studies that have combined genotypic and phenotypic data to detect patterns of local adaptation.

学科主题Plant Sciences
语种英语
WOS记录号WOS:000657081700010
源URL[http://ir.xtbg.org.cn/handle/353005/12362]  
专题西双版纳热带植物园_动植物关系组
作者单位1.Chinese Acad Forestry, State Key Lab Tree Genet & Breeding, Beijing 100091, Peoples R China
2.[Tomlinson, Kyle W.] Chinese Acad Sci, Ctr Integrat Conservat, Xishuangbanna Trop Bot Garden, Menglun 666303, Yunnan, Peoples R China
3.Umea Univ, Dept Ecol & Environm Sci, UPSC, S-90187 Umea, Sweden
4.[Zhao, Wei
5.Chinese Acad Forestry, Expt Ctr Trop Forestry, Pingxiang 532600, Guangxi Zhuang, Peoples R China
6.Tomlinson, Kyle W.] Chinese Acad Sci, Core Bot Gardens, Ctr Conservat Biol, Menglun 666303, Yunnan, Peoples R China
7.Chinese Acad Sci, CAS Key Lab Trop Forest Ecol, Xishuangbanna Trop Bot Garden, Menglun 666303, Yunnan, Peoples R China
8.Xia, Shang-Wen
9.[Gao, Jie
推荐引用方式
GB/T 7714
Gao, Jie,Liu, Zhi-Long,Zhao, Wei,et al. Combined genotype and phenotype analyses reveal patterns of genomic adaptation to local environments in the subtropical oak Quercus acutissima[J]. JOURNAL OF SYSTEMATICS AND EVOLUTION,2021,59(3):541-556.
APA Gao, Jie.,Liu, Zhi-Long.,Zhao, Wei.,Tomlinson, Kyle W..,Xia, Shang-Wen.,...&Chen, Jin.(2021).Combined genotype and phenotype analyses reveal patterns of genomic adaptation to local environments in the subtropical oak Quercus acutissima.JOURNAL OF SYSTEMATICS AND EVOLUTION,59(3),541-556.
MLA Gao, Jie,et al."Combined genotype and phenotype analyses reveal patterns of genomic adaptation to local environments in the subtropical oak Quercus acutissima".JOURNAL OF SYSTEMATICS AND EVOLUTION 59.3(2021):541-556.

入库方式: OAI收割

来源:西双版纳热带植物园

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