Can plastid genome sequencing be used for species identification in Lauraceae?
文献类型:期刊论文
作者 | Liu, Zhi-Fang; Ma, Hui![]() |
刊名 | BOTANICAL JOURNAL OF THE LINNEAN SOCIETY
![]() |
出版日期 | 2021 |
卷号 | 197期号:1页码:1-14 |
关键词 | cytonuclear discordance DNA barcoding nrDNA phylogenetics plastomes |
ISSN号 | 0024-4074 |
DOI | 10.1093/botlinnean/boab018 |
英文摘要 | Using DNA barcoding for species identification remains challenging for many plant groups. New sequencing approaches such as complete plastid genome sequencing may provide some increased power and practical benefits for species identification beyond standard plant DNA barcodes. We undertook a case study comparing standard DNA barcoding to plastid genome sequencing for species discrimination in the ecologically and economically important family Lauraceae, using 191 plastid genomes for 131 species from 25 genera, representing the largest plastome data set for Lauraceae to date. We found that the plastome sequences were useful in correcting some identification errors and for finding new and cryptic species. However, plastome data overall were only able to discriminate c. 60% of the species in our sample, with this representing a modest improvement from 40 to 50% discrimination success with the standard plant DNA barcodes. Beyond species discrimination, the plastid genome sequences revealed complex relationships in the family, with 12/25 genera being non-monophyletic and with extensive incongruence relative to nuclear ribosomal DNA. These results highlight that although useful for improving phylogenetic resolution in the family and providing some species-level insights, plastome sequences only partially improve species discrimination, and this reinforces the need for large-scale nuclear data to improve discrimination among closely related species. |
学科主题 | Plant Sciences |
语种 | 英语 |
WOS记录号 | WOS:000692321700001 |
源URL | [http://ir.xtbg.org.cn/handle/353005/12358] ![]() |
专题 | 西双版纳热带植物园_植物系统与保护生物学研究组 |
作者单位 | 1.Liu, Zhi-Fang; Hollingsworth, Peter M.] Royal Bot Garden Edinburgh, Genet & Conservat Sect, Edinburgh, Midlothian, Scotland 2.Chinese Acad Sci, Kunming Inst Bot, Germplasm Bank Wild Species, Kunming, Yunnan, Peoples R China 3.Twyford, Alex D.] Univ Edinburgh, Inst Evolutionary Biol, Ashworth Labs, Edinburgh, Midlothian, Scotland 4.Conran, John G.] Univ Adelaide, Sch Biol Sci, Sprigg Geobiol Ctr, Adelaide, SA, Australia 5.Conran, John G.] Univ Adelaide, Sch Biol Sci, Australian Ctr Evolutionary Biol & Biodivers, Adelaide, SA, Australia 6.Shandong Normal Univ, Coll Life Sci, Shandong Prov Key Lab Plant Stress Res, Jinan, Peoples R China 7.Tibet Agr & Anim Husb Univ, Nyingchi, Peoples R China 8.Chinese Acad Sci, Kunming Inst Bot, Herbarium KUN, Kunming, Yunnan, Peoples R China 9.Chinese Acad Sci, Sino African Joint Res Ctr, Wuhan, Peoples R China 10.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing, Peoples R China |
推荐引用方式 GB/T 7714 | Liu, Zhi-Fang,Ma, Hui,Ci, Xiu-Qin,et al. Can plastid genome sequencing be used for species identification in Lauraceae?[J]. BOTANICAL JOURNAL OF THE LINNEAN SOCIETY,2021,197(1):1-14. |
APA | Liu, Zhi-Fang.,Ma, Hui.,Ci, Xiu-Qin.,Li, Lang.,Song, Yu.,...&Li, Jie.(2021).Can plastid genome sequencing be used for species identification in Lauraceae?.BOTANICAL JOURNAL OF THE LINNEAN SOCIETY,197(1),1-14. |
MLA | Liu, Zhi-Fang,et al."Can plastid genome sequencing be used for species identification in Lauraceae?".BOTANICAL JOURNAL OF THE LINNEAN SOCIETY 197.1(2021):1-14. |
入库方式: OAI收割
来源:西双版纳热带植物园
其他版本
除非特别说明,本系统中所有内容都受版权保护,并保留所有权利。