Complete plastid genome sequences of three tropical Alseodaphne trees in the family Lauraceae
文献类型：期刊论文
| 作者 | Song, Yu; Yao, Xin; Liu, Bing2; Tan, Yunhong; Corlett, Richard T. |
| 刊名 | HOLZFORSCHUNG
 |
| 出版日期 | 2018 |
| 卷号 | 72期号:4页码:337-345 |
| 关键词 | Alseodaphne candidate barcode chloroplast genome comparative genomics Lauraceae phylogenetic relationship |
| ISSN号 | 0018-3830 |
| DOI | 10.1515/hf-2017-0065 |
| 文献子类 | Article |
| 英文摘要 | Alseodaphne is a genus of timber trees (ca. 40 spp.) belonging to the Persea group of the Lauraceae. It is widely distributed in tropical Asia, but is often confused with Dehaasia and Nothaphoebe, and the systematics of the genus is unclear. Here, the complete chloroplast genome sequences of A. semecarpifolia will be reported, the type species of Alseodaphne, and two China-endemic species, A. gracilis and A. huanglianshanensis. The three plastomes were 153 051 bp, 153 099 bp and 153 070 bp, respectively. Comparative genomic analyses indicate that the three Alseodaphne plastomes have similar genome size and those are very different with previously published plastomes of Lauraceae in length. The length difference is directly caused by inverted repeats expansion/contraction. Four highly variable loci including psbD-trnM, ndhF-rpl32, rpl32-trnL and ycf1 among the three Alseodaphne species were identified as useful plastid candidate barcodes for Alseodaphne and Lauraceae species. Phylogenetic analyses based on 12 complete plastomes of Lauraceae species confirm a monophyletic Persea group comprising species of Alseodaphne, Phoebe, Persea and Machilus. |
| 学科主题 | Forestry ; Materials Science, Paper & Wood |
| 出版地 | BERLIN |
| 电子版国际标准刊号 | 1437-434X |
| WOS关键词 | CHLOROPLAST GENOME ; DNA ; WOOD ; CONSTITUENTS ; ANGIOSPERMS |
| 语种 | 英语 |
| WOS记录号 | WOS:000428509500010 |
| 出版者 | WALTER DE GRUYTER GMBH |
| 资助机构 | Southeast Asia Biodiversity Research Institute, Chinese Academy of Sciences [Y4ZK111B01] ; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31600531] ; CAS Light of West China Program ; 1000 Talents Program [WQ20110491035] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/20561]  |
| 专题 | 植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文 |
| 作者单位 | 1.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 2.Song, Yu; Yao, Xin; Tan, Yunhong; Corlett, Richard T.] Chinese Acad Sci, Southeast Asia Biodivers Res Inst, Yezin, Nay Pyi Taw, Myanmar 3.[Song, Yu; Yao, Xin; Tan, Yunhong; Corlett, Richard T.] Chinese Acad Sci, Ctr Integrat Conservat, Xishuangbanna Trop Bot Garden, Mengla 666303, Peoples R China |
| 推荐引用方式 GB/T 7714 | Song, Yu,Yao, Xin,Liu, Bing,et al. Complete plastid genome sequences of three tropical Alseodaphne trees in the family Lauraceae[J]. HOLZFORSCHUNG,2018,72(4):337-345. |
| APA | Song, Yu,Yao, Xin,Liu, Bing,Tan, Yunhong,&Corlett, Richard T..(2018).Complete plastid genome sequences of three tropical Alseodaphne trees in the family Lauraceae.HOLZFORSCHUNG,72(4),337-345. |
| MLA | Song, Yu,et al."Complete plastid genome sequences of three tropical Alseodaphne trees in the family Lauraceae".HOLZFORSCHUNG 72.4(2018):337-345. |
入库方式： OAI收割
来源：植物研究所
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