Evolutionary and phylogenetic aspects of the chloroplast genome of Chaenomeles species
文献类型：期刊论文
| 作者 | Sun, Jiahui; Wang, Yiheng; Liu, Yanlei1,3; Xu, Chao1; Yuan, Qingjun; Guo, Lanping; Huang, Luqi |
| 刊名 | SCIENTIFIC REPORTS
 |
| 出版日期 | 2020 |
| 卷号 | 10期号:1 |
| ISSN号 | 2045-2322 |
| DOI | 10.1038/s41598-020-67943-1 |
| 文献子类 | Article |
| 英文摘要 | Chaenomeles (family Rosaceae) is a genus of five diploid species of deciduous spiny shrubs that are native to Central Asia and Japan. It is an important horticultural crop (commonly known as flowering quinces) in Europe and Asia for its high yield in fruits that are rich in juice, aroma, and dietary fiber. Therefore, the development of effective genetic markers of Chaenomeles species is advantageous for crop improvement through breeding and selection. In this study, we successfully assembled and analyzed the chloroplast genome of five Chaenomeles species. The chloroplast genomes of the five Chaenomeles species were very similar with no structural or content rearrangements among them. The chloroplast genomes ranged from 159,436 to 160,040 bp in length and contained a total of 112 unique genes, including 78 protein-coding genes, 30 tRNAs, and 4 rRNAs. Three highly variable regions, including trnR-atpA, trnL-F, and rpl32-ccsA, were identified. Phylogenetic analysis based on the complete chloroplast genome showed that Chaenomeles forms a monophyletic clade and had a close relationship with the genera Docynia and Malus. Analyses for phylogenetic relationships and the development of available genetic markers in future could provide valuable information regarding genetics and breeding mechanisms of the Chaenomeles species. |
| 学科主题 | Multidisciplinary Sciences |
| 出版地 | LONDON |
| WOS关键词 | PLASTID GENOMES ; ROSACEAE ; CLASSIFICATION ; DIVERSITY ; SEQUENCES ; SOFTWARE ; TORTOISE ; REPEATS ; UTILITY ; RAPDS |
| WOS研究方向 | Science & Technology - Other Topics |
| 语种 | 英语 |
| WOS记录号 | WOS:000548308300005 |
| 出版者 | NATURE PUBLISHING GROUP |
| 资助机构 | Fundamental Research Funds for the Central Public Welfare Research Institutes [ZZXT201802] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/21679]  |
| 专题 | 植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文 |
| 作者单位 | 1.China Acad Chinese Med Sci, Natl Resource Ctr Chinese Mat Med, Beijing 100700, Peoples R China 2.Univ Chinese Acad Sci, Beijing 100049, Peoples R China 3.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China |
| 推荐引用方式 GB/T 7714 | Sun, Jiahui,Wang, Yiheng,Liu, Yanlei,et al. Evolutionary and phylogenetic aspects of the chloroplast genome of Chaenomeles species[J]. SCIENTIFIC REPORTS,2020,10(1). |
| APA | Sun, Jiahui.,Wang, Yiheng.,Liu, Yanlei.,Xu, Chao.,Yuan, Qingjun.,...&Huang, Luqi.(2020).Evolutionary and phylogenetic aspects of the chloroplast genome of Chaenomeles species.SCIENTIFIC REPORTS,10(1). |
| MLA | Sun, Jiahui,et al."Evolutionary and phylogenetic aspects of the chloroplast genome of Chaenomeles species".SCIENTIFIC REPORTS 10.1(2020). |
入库方式： OAI收割
来源：植物研究所
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