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Leveraging plastomes for comparative analysis and phylogenomic inference within Scutellarioideae (Lamiaceae)

文献类型：期刊论文

作者Zhao, Fei8; Li, Bo1; Drew, Bryan T.; Chen, Ya-Ping; Wang, Qiang6; Yu, Wen-Bin; Liu, En-De; Salmaki, Yasaman3,4; Peng, Hua; Xiang, Chun-Lei
刊名PLOS ONE
出版日期2020
卷号15期号:5
ISSN号1932-6203
DOI10.1371/journal.pone.0232602
文献子类Article
英文摘要Scutellaria, or skullcaps, are medicinally important herbs in China, India, Japan, and elsewhere. Though Scutellaria is the second largest and one of the more taxonomically challenging genera within Lamiaceae, few molecular systematic studies have been undertaken within the genus; in part due to a paucity of available informative markers. The lack of informative molecular markers for Scutellaria hinders our ability to accurately and robustly reconstruct phylogenetic relationships, which hampers our understanding of the diversity, phylogeny, and evolutionary history of this cosmopolitan genus. Comparative analyses of 15 plastomes, representing 14 species of subfamily Scutellarioideae, indicate that plastomes within Scutellarioideae contain about 151,000 nucleotides, and possess a typical quadripartite structure. In total, 590 simple sequence repeats, 489 longer repeats, and 16 hyper-variable regions were identified from the 15 plastomes. Phylogenetic relationships among the 14 species representing four of the five genera of Scutellarioideae were resolved with high support values, but the current infrageneric classification of Scutellaria was not supported in all analyses. Complete plastome sequences provide better resolution at an interspecific level than using few to several plastid markers in phylogenetic reconstruction. The data presented here will serve as a foundation to facilitate DNA barcoding, species identification, and systematic research within Scutellaria, which is an important medicinal plant resource worldwide.
学科主题Multidisciplinary Sciences
出版地SAN FRANCISCO
WOS关键词COMPLETE CHLOROPLAST GENOME ; SALVIA LAMIACEAE ; STAMINAL EVOLUTION ; CHARACTER EVOLUTION ; MOLECULAR PHYLOGENY ; GENETIC DIVERSITY ; INVERTED REPEAT ; SEQUENCES ; BIOGEOGRAPHY ; SYSTEMATICS
WOS研究方向Science & Technology - Other Topics
语种英语
WOS记录号WOS:000537285700045
出版者PUBLIC LIBRARY SCIENCE
资助机构Ten Thousand Talents Program of Yunnan (Top-notch Young Talents) [YNWR-QNBJ-2018-279] ; CAS Light of West China Program ; Excellent Youth Fund Project of Yunnan Provincial Science and Technology Department [2019FI009] ; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31870181]
源URL[http://ir.ibcas.ac.cn/handle/2S10CLM1/21741]  
专题植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文
作者单位1.Univ Chinese Acad Sci, Beijing, Peoples R China
2.Univ Tehran, Coll Sci, Sch Biol, Dept Plant Sci, Tehran, Iran
3.Univ Tehran, Coll Sci, Sch Biol, Ctr Excellence Phylogeny Living Organisms, Tehran, Iran
4.Chinese Acad Sci, Ctr Integrat Conservat, Xishuangbanna Trop Bot Garden, Mengla, Peoples R China
5.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing, Peoples R China
6.Drew, Bryan T.] Univ Nebraska Kearney, Dept Biol, Kearney, NE USA
7.Jiangxi Agr Univ, Coll Agron, Res Ctr Ecol Sci, Nanchang, Jiangxi, Peoples R China
8.Chinese Acad Sci, Kunming Inst Bot, CAS Key Lab Plant Divers & Biogeog East Asia, Kunming, Yunnan, Peoples R China
推荐引用方式
GB/T 7714		 Zhao, Fei,Li, Bo,Drew, Bryan T.,et al. Leveraging plastomes for comparative analysis and phylogenomic inference within Scutellarioideae (Lamiaceae)[J]. PLOS ONE,2020,15(5).
APA Zhao, Fei.,Li, Bo.,Drew, Bryan T..,Chen, Ya-Ping.,Wang, Qiang.,...&Xiang, Chun-Lei.(2020).Leveraging plastomes for comparative analysis and phylogenomic inference within Scutellarioideae (Lamiaceae).PLOS ONE,15(5).
MLA Zhao, Fei,et al."Leveraging plastomes for comparative analysis and phylogenomic inference within Scutellarioideae (Lamiaceae)".PLOS ONE 15.5(2020).

入库方式： OAI收割

来源：植物研究所

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