Phylogenetic relationships and chloroplast capture in the Amelanchier-Malacomeles-Peraphyllum clade (Maleae, Rosaceae): Evidence from chloroplast genome and nuclear ribosomal DNA data using genome skimming
文献类型：期刊论文
| 作者 | Liu, Bin-Bin; Campbell, Christopher S.; Hong, De-Yuan; Wen, Jun1 |
| 刊名 | MOLECULAR PHYLOGENETICS AND EVOLUTION
 |
| 出版日期 | 2020 |
| 卷号 | 147 |
| 关键词 | Chloroplast capture Hybridization Maleae Nuclear ribosomal DNA Plastome Rosaceae |
| ISSN号 | 1055-7903 |
| DOI | 10.1016/j.ympev.2020.106784 |
| 文献子类 | Article |
| 英文摘要 | The Amelanchier-Malacomeles-Peraphyllum (AMP) Glade consists of ca. 26 species distributed in North and Central America, Europe, Asia, and northwestern Africa. While molecular and morphological data strongly support this Glade, relationships of its genera are uncertain. Support for the monophyly of Amelanchier and for the phylogenetic positions of Malacomeles and Peraphyllum has varied between studies. Our goals were to reconstruct a robust phylogeny of the AMP Glade in the framework of Maleae and clarify the phylogenetic placements of Malacomeles and Peraphyllum. This study employs sequences of the whole plastome and nuclear ribosomal DNA (nrDNA) repeats assembled using genome skimming with 131 samples representing 115 species in 31 genera of Rosaceae, especially Maleae. Maximum likelihood (ML) and Bayesian analysis (BI) of whole plastome datasets strongly supported Amelanchier as not monophyletic, with Peraphyllum sister to eastern North American Amelanchier and Malacomeles sister to the western North American-Eurasian Amelanchier. In contrast, nrDNA recovered the monophyly of Amelanchier, with Peraphyllum sister to Amelanchier and Malacomeles sister to the Amelanchier-Peraphyllum Glade. The strong topological conflicts between plastome and nrDNA phylogenies of Peraphyllum and of Malacomeles are best explained by ancient chloroplast capture that occurred in SW North America. |
| 学科主题 | Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity |
| 出版地 | SAN DIEGO |
| 电子版国际标准刊号 | 1095-9513 |
| WOS关键词 | MALOIDEAE ROSACEAE ; SHADBUSH ROSACEAE ; GENE FLOW ; HYBRIDIZATION ; APOMIXIS ; DIVERSIFICATION ; EVOLUTION ; HYBRID ; ALIGNMENT ; MODEL |
| WOS研究方向 | Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity |
| 语种 | 英语 |
| WOS记录号 | WOS:000527791400011 |
| 出版者 | ACADEMIC PRESS INC ELSEVIER SCIENCE |
| 资助机构 | National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31620103902] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/21798]  |
| 专题 | 植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文 |
| 作者单位 | 1.[Liu, Bin-Bin 2.[Campbell, Christopher S.] Univ Maine, Sch Biol & Ecol, Orono, ME 04469 USA 3.Smithsonian Inst, Dept Bot, Natl Museum Nat Hist, POB 37012, Washington, DC 20013 USA 4.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China |
| 推荐引用方式 GB/T 7714 | Liu, Bin-Bin,Campbell, Christopher S.,Hong, De-Yuan,et al. Phylogenetic relationships and chloroplast capture in the Amelanchier-Malacomeles-Peraphyllum clade (Maleae, Rosaceae): Evidence from chloroplast genome and nuclear ribosomal DNA data using genome skimming[J]. MOLECULAR PHYLOGENETICS AND EVOLUTION,2020,147. |
| APA | Liu, Bin-Bin,Campbell, Christopher S.,Hong, De-Yuan,&Wen, Jun.(2020).Phylogenetic relationships and chloroplast capture in the Amelanchier-Malacomeles-Peraphyllum clade (Maleae, Rosaceae): Evidence from chloroplast genome and nuclear ribosomal DNA data using genome skimming.MOLECULAR PHYLOGENETICS AND EVOLUTION,147. |
| MLA | Liu, Bin-Bin,et al."Phylogenetic relationships and chloroplast capture in the Amelanchier-Malacomeles-Peraphyllum clade (Maleae, Rosaceae): Evidence from chloroplast genome and nuclear ribosomal DNA data using genome skimming".MOLECULAR PHYLOGENETICS AND EVOLUTION 147(2020). |
入库方式： OAI收割
来源：植物研究所
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