Deciphering the high-quality genome sequence of coriander that causes controversial feelings
文献类型：期刊论文
| 作者 | Song, Xiaoming5; Wang, Jinpeng3,4,5; Li, Nan5; Yu, Jigao; Meng, Fanbo; Wei, Chendan; Liu, Chao; Chen, Wei2,5; Nie, Fulei5; Zhang, Zhikang |
| 刊名 | PLANT BIOTECHNOLOGY JOURNAL
 |
| 出版日期 | 2020 |
| 卷号 | 18期号:6页码:1444-1456 |
| 关键词 | De novo coriander genome tetraploid genome evolution terpenoid biosynthesis pathway RNA-Seq metabolomics |
| ISSN号 | 1467-7644 |
| DOI | 10.1111/pbi.13310 |
| 文献子类 | Article |
| 英文摘要 | Coriander (Coriandrum sativum L. 2n = 2x = 22), a plant from the Apiaceae family, also called cilantro or Chinese parsley, is a globally important crop used as vegetable, spice, fragrance and traditional medicine. Here, we report a high-quality assembly and analysis of its genome sequence, anchored to 11 chromosomes, with total length of 2118.68 Mb and N50 scaffold length of 160.99 Mb. We found that two whole-genome duplication events, respectively, dated to similar to 45-52 and similar to 54-61 million years ago, were shared by the Apiaceae family after their split from lettuce. Unbalanced gene loss and expression are observed between duplicated copies produced by these two events. Gene retention, expression, metabolomics and comparative genomic analyses of terpene synthase (TPS) gene family, involved in terpenoid biosynthesis pathway contributing to coriander's special flavour, revealed that tandem duplication contributed to coriander TPS gene family expansion, especially compared to their carrot counterparts. Notably, a TPS gene highly expressed in all 4 tissues and 3 development stages studied is likely a major-effect gene encoding linalool synthase and myrcene synthase. The present genome sequencing, transcriptome, metabolome and comparative genomic efforts provide valuable insights into the genome evolution and spice trait biology of Apiaceae and other related plants, and facilitated further research into important gene functions and crop improvement. |
| 学科主题 | Biotechnology & Applied Microbiology ; Plant Sciences |
| 出版地 | HOBOKEN |
| 电子版国际标准刊号 | 1467-7652 |
| WOS关键词 | GENE FAMILY ; CAROTENOID ACCUMULATION ; PHYLOGENETIC ANALYSIS ; WEB SERVER ; SATIVUM ; IDENTIFICATION ; ANNOTATION ; TOOL ; BIOSYNTHESIS ; PREDICTION |
| WOS研究方向 | Biotechnology & Applied Microbiology ; Plant Sciences |
| 语种 | 英语 |
| WOS记录号 | WOS:000511028000001 |
| 出版者 | WILEY |
| 资助机构 | National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31801856, 31371282, 2016YFD0101001] ; Hebei Province Higher Education Youth Talents Program [BJ2018016] ; China-Hebei 100 Scholars Supporting Project [E2013100003] ; Natural Science Foundation of HebeiNatural Science Foundation of Hebei Province [C2017209103] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/21931]  |
| 专题 | 植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文 |
| 作者单位 | 1.Chengdu Univ Tradit Chinese Med, Sch Genom & Biobig Data, Chengdu, Peoples R China 2.Univ Chinese Acad Sci, Beijing, Peoples R China 3.North China Univ Sci & Technol, Ctr Genom & Computat Biol, Tangshan, Hebei, Peoples R China 4.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing, Peoples R China 5.North China Univ Sci & Technol, Sch Life Sci, Tangshan, Hebei, Peoples R China 6.Paterson, Andrew H.] Univ Georgia, Plant Genome Mapping Lab, Athens, GA 30602 USA 7.Agr & Agri Food Canada, Fredericton Res & Dev Ctr, Fredericton, NB, Canada |
| 推荐引用方式 GB/T 7714 | Song, Xiaoming,Wang, Jinpeng,Li, Nan,et al. Deciphering the high-quality genome sequence of coriander that causes controversial feelings[J]. PLANT BIOTECHNOLOGY JOURNAL,2020,18(6):1444-1456. |
| APA | Song, Xiaoming.,Wang, Jinpeng.,Li, Nan.,Yu, Jigao.,Meng, Fanbo.,...&Wang, Xiyin.(2020).Deciphering the high-quality genome sequence of coriander that causes controversial feelings.PLANT BIOTECHNOLOGY JOURNAL,18(6),1444-1456. |
| MLA | Song, Xiaoming,et al."Deciphering the high-quality genome sequence of coriander that causes controversial feelings".PLANT BIOTECHNOLOGY JOURNAL 18.6(2020):1444-1456. |
入库方式： OAI收割
来源：植物研究所
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