Phylogeny of Diplazium (Athyriaceae) revisited: Resolving the backbone relationships based on plastid genomes and phylogenetic tree space analysis
文献类型：期刊论文
| 作者 | Wei, Ran; Zhang, Xian-Chun
|
| 刊名 | MOLECULAR PHYLOGENETICS AND EVOLUTION
 |
| 出版日期 | 2020 |
| 卷号 | 143 |
| 关键词 | Backbone Diplazium Evolutionary radiation Plastome Phylogenetic clustering |
| ISSN号 | 1055-7903 |
| DOI | 10.1016/j.ympev.2019.106699 |
| 文献子类 | Article |
| 英文摘要 | Despite progress in resolving the phylogeny of twinsorus ferns (Diplazium) based on multilocus phylogenetic studies, uncertainty remains especially for deep, or backbone relationships among closely related clades, suggesting a classic case of rapid evolutionary radiation. Here, we investigated the deep phylogenetic relationships within Diplazium by sampling all major clades and using 51 plastid genomes (plastomes), of which 38 were newly sequenced with high-throughput sequencing technology, resulting more than 127,000 informative sites. Using parsimony, maximum likelihood and Bayesian analyses of plastome sequences, we largely resolved the backbone of the phylogeny of Diplazium with strong support. However, we also detected phylogenetic incongruence among different datasets and moderately to poorly supported relationships, particularly at several extremely short internal branches. By using phylogenetic tree space and topology-clustering analyses, we provide evidence that conflicting phylogenetic signals can be found across the trees estimated from individual chloroplast protein-coding genes, which may underlie the difficulty of systematics of Diplazium. Furthermore, our phylogenetic estimate offers more resolution over previous multilocus analyses, providing a framework for future taxonomic revisions of sectional classification of Diplazium. Our study demonstrates the advantage of a character-rich plastome dataset, combining the comparison of different phylogenetic methods, for resolving the recalcitrant lineages that have undergone rapid radiation and dramatic changes in evolutionary rates. |
| 学科主题 | Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity |
| 出版地 | SAN DIEGO |
| 电子版国际标准刊号 | 1095-9513 |
| WOS关键词 | EUPOLYPOD II FERNS ; HORIZONTAL TRANSFER ; DEEP RELATIONSHIPS ; RAPID RADIATION ; DATA SET ; CHLOROPLAST ; EVOLUTION ; SUPPORT ; GENUS ; APPROXIMATION |
| WOS研究方向 | Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity |
| 语种 | 英语 |
| WOS记录号 | WOS:000506225200026 |
| 出版者 | ACADEMIC PRESS INC ELSEVIER SCIENCE |
| 资助机构 | National Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31600175] ; External Cooperation Program of Bureau of International Co-operation Chinese Academy of Sciences [GJHZ201321] |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/21953]  |
| 专题 | 植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文 |
| 作者单位 | 1.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 2.[Wei, Ran |
| 推荐引用方式 GB/T 7714 | Wei, Ran,Zhang, Xian-Chun. Phylogeny of Diplazium (Athyriaceae) revisited: Resolving the backbone relationships based on plastid genomes and phylogenetic tree space analysis[J]. MOLECULAR PHYLOGENETICS AND EVOLUTION,2020,143. |
| APA | Wei, Ran,&Zhang, Xian-Chun.(2020).Phylogeny of Diplazium (Athyriaceae) revisited: Resolving the backbone relationships based on plastid genomes and phylogenetic tree space analysis.MOLECULAR PHYLOGENETICS AND EVOLUTION,143. |
| MLA | Wei, Ran,et al."Phylogeny of Diplazium (Athyriaceae) revisited: Resolving the backbone relationships based on plastid genomes and phylogenetic tree space analysis".MOLECULAR PHYLOGENETICS AND EVOLUTION 143(2020). |
入库方式： OAI收割
来源：植物研究所
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