Plastid phylogenomic insights into the evolution of the Caprifoliaceae s.l. (Dipsacales)
文献类型：期刊论文
| 作者 | Wang, Hong-Xin; Liu, Huan3,7; Moore, Michael J.; Landrein, Sven5; Liu, Bing2,4; Zhu, Zhi-Xin; Wang, Hua-Feng |
| 刊名 | MOLECULAR PHYLOGENETICS AND EVOLUTION
 |
| 出版日期 | 2020 |
| 卷号 | 142 |
| 关键词 | Caprifoliaceae s.l. Dipsacales Plastome Phylogenetics |
| ISSN号 | 1055-7903 |
| DOI | 10.1016/j.ympev.2019.106641 |
| 文献子类 | Article |
| 英文摘要 | The family Caprifoliaceae s.l. is an asterid angiosperm clade of ca. 960 species, most of which are distributed in temperate regions of the northern hemisphere. Recent studies show that the family comprises seven major clades: Linnaeoideae, Zabelia, Morinoideae, Dipsacoideae, Valerianoideae, Caprifolioideae, and Diervilloideae. However, its phylogeny at the subfamily or genus level remains controversial, and the backbone relationships among subfamilies are incompletely resolved. In this study, we utilized complete plastome sequencing to resolve the relationships among the subfamilies of the Caprifoliaceae s.l. and clarify several long-standing controversies. We generated and analyzed plastomes of 48 accessions of Caprifoliaceae s.l., representing 44 species, six subfamilies and one genus. Combined with available Caprifoliaceae s.l. plastomes on GenBank and 12 outgroups, we analyzed a final dataset of 68 accessions. Genome structure was strongly conserved in general, although the boundaries between the Inverted Repeat were found to have contracted across Caprifoliaceae s.l. to exclude rpl2, rps19, and ycf1, all or parts of which are typically present in the IR of most angiosperms. The ndhF gene was found to have been inverted in all plastomes of Adoxaceae. Phylogenomic analyses of 68 complete plastomes yielded a highly supported topology that strongly supported the monophyly of Zabelia and its sister relationship to Morinoideae. Moreover, a clade of Valerianoideae + Dipsacoideae was recovered as sister to a clade of Linnaeoideae + Zabelia + Morinoideae clade, and Heptacodium was sister to remaining Caprifolioideae. The Diervilloideae and Caprifolioideae were successively sister to all other Caprifoliaceae s.l. Major lineages of Caprifoliaceae s.l. were estimated to have diverged from the Upper Cretaceous to the Eocene (50-100 Ma), whereas within-genus diversification was dated to the Oligocene and later, concomitant with global cooling and drying. Our results demonstrate the power of plastid phylogenomics in improving estimates of phylogeny among genera and subfamilies, and provide new insights into plastome evolution across Caprifoliaceae s.l. |
| 学科主题 | Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity |
| 出版地 | SAN DIEGO |
| 电子版国际标准刊号 | 1095-9513 |
| WOS关键词 | COMPLETE CHLOROPLAST GENOME ; INVERTED REPEAT ; TRACHELIUM-CAERULEUM ; TRIBE LINNAEEAE ; SEQUENCE ; DNA ; EXPANSION ; MITOCHONDRIAL ; CONTRACTION ; ANGIOSPERMS |
| WOS研究方向 | Biochemistry & Molecular Biology ; Evolutionary Biology ; Genetics & Heredity |
| 语种 | 英语 |
| WOS记录号 | WOS:000498650200004 |
| 出版者 | ACADEMIC PRESS INC ELSEVIER SCIENCE |
| 资助机构 | National Natural Scientific Foundation of ChinaNational Natural Science Foundation of China (NSFC) [31660055, 31660074] ; Hainan University [kyqd1633, kydq(zr) 1840] ; China Scholarship CouncilChina Scholarship Council [201907565012] ; Shenzhen Municipal Government of China [JCYJ20150831201123287, JCYJ20160331150739027] ; Guangdong Provincial Key Laboratory of Genome Read and Write [2017B030301011] ; National Wild Plant Germplasm Resource Center ; Basic Research Program |
| 源URL | [http://ir.ibcas.ac.cn/handle/2S10CLM1/21966]  |
| 专题 | 植物研究所_系统与进化植物学研究中心_系统与进化植物学研究中心_学位论文 |
| 作者单位 | 1.Chinese Acad Sci, Sino African Joint Res Ctr, Wuhan 430074, Hubei, Peoples R China 2.Chinese Acad Sci, Inst Bot, State Key Lab Systemat & Evolutionary Bot, Beijing 100093, Peoples R China 3.Hainan Univ, Sch Life & Pharmaceut Sci, Key Lab Trop Biol Resources, Minist Educ, Haikou 570228, Hainan, Peoples R China 4.Chinese Acad Sci, Xishuangbanna Trop Bot Garden, Menglun 666303, Peoples R China 5.Moore, Michael J.] Oberlin Coll, Dept Biol, Oberlin, OH 44074 USA 6.BGI Shenzhen, State Key Lab Agr Genom, Shenzhen 518083, Guangdong, Peoples R China 7.BGI Shenzhen, Beishan Ind Zone, Shenzhen 518083, Guangdong, Peoples R China |
| 推荐引用方式 GB/T 7714 | Wang, Hong-Xin,Liu, Huan,Moore, Michael J.,et al. Plastid phylogenomic insights into the evolution of the Caprifoliaceae s.l. (Dipsacales)[J]. MOLECULAR PHYLOGENETICS AND EVOLUTION,2020,142. |
| APA | Wang, Hong-Xin.,Liu, Huan.,Moore, Michael J..,Landrein, Sven.,Liu, Bing.,...&Wang, Hua-Feng.(2020).Plastid phylogenomic insights into the evolution of the Caprifoliaceae s.l. (Dipsacales).MOLECULAR PHYLOGENETICS AND EVOLUTION,142. |
| MLA | Wang, Hong-Xin,et al."Plastid phylogenomic insights into the evolution of the Caprifoliaceae s.l. (Dipsacales)".MOLECULAR PHYLOGENETICS AND EVOLUTION 142(2020). |
入库方式： OAI收割
来源：植物研究所
浏览0
下载0
收藏0
其他版本
除非特别说明，本系统中所有内容都受版权保护，并保留所有权利。